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Cofit
Protein
Homologs
Top cofit genes for CSW01_18950 from
Vibrio cholerae E7946 ATCC 55056
GGDEF domain-containing protein
SEED: GGDEF family protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
CSW01
_02165
MSHA pilin protein MshD
no
0.54
2
CSW01
_05550
oligopeptide ABC transporter permease OppB
no
0.52
3
CSW01
_05555
oligopeptide ABC transporter permease OppC
no
0.52
4
CSW01
_07205
copper-translocating P-type ATPase
no
0.52
5
CSW01
_18750
methyl-accepting chemotaxis protein
no
0.51
6
CSW01
_19410
DUF2618 domain-containing protein
no
0.49
7
CSW01
_17675
GGDEF domain-containing protein
no
0.49
8
CSW01
_00870
cytochrome c5 family protein
no
0.49
9
CSW01
_12240
single-stranded-DNA-specific exonuclease RecJ
no
0.48
10
CSW01
_12245
bifunctional protein-disulfide isomerase/oxidoreductase DsbC
no
0.48
11
CSW01
_07490
dihydroorotate dehydrogenase (quinone)
no
0.48
12
CSW01
_18850
maltose ABC transporter permease MalF
no
0.47
13
CSW01
_07495
NAD-glutamate dehydrogenase
no
0.47
14
CSW01
_14355
DUF1566 domain-containing protein
no
0.47
15
CSW01
_18570
glycine C-acetyltransferase
no
0.47
16
CSW01
_19250
hypothetical protein
no
0.46
17
CSW01
_00570
cytochrome c4
no
0.46
18
CSW01
_14805
tryptophanase
no
0.46
19
CSW01
_02460
type IV pili twitching motility protein PilT
no
0.46
20
CSW01
_14570
type VI secretion system baseplate subunit TssG
no
0.45
Or look for
negative cofitness