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  • Top cofit genes for CSW01_17335 from Vibrio cholerae E7946 ATCC 55056

    ligand-gated channel
    SEED: Putative TonB-dependent heme receptor HasR
    KEGG: iron complex outermembrane recepter protein

    Rank Hit Name Description Conserved? Cofitness  
    1 CSW01_14720 sigma-54-dependent Fis family transcriptional regulator no 0.55
    2 CSW01_08390 hypothetical protein no 0.53
    3 CSW01_18715 iron ABC transporter permease no 0.52
    4 CSW01_03270 hypothetical protein no 0.50
    5 CSW01_10565 hypothetical protein no 0.50
    6 CSW01_08135 MFS transporter no 0.49
    7 CSW01_17700 sigma-54-dependent Fis family transcriptional regulator no 0.49
    8 CSW01_18435 hypothetical protein no 0.48
    9 CSW01_04120 citrate lyase ACP no 0.47
    10 CSW01_14195 IclR family transcriptional regulator no 0.47
    11 CSW01_07550 GntR family transcriptional regulator no 0.46
    12 CSW01_06245 L-cystine transporter no 0.45
    13 CSW01_08760 NAD-dependent succinate-semialdehyde dehydrogenase 0.42 0.44
    14 CSW01_09990 hypothetical protein no 0.43
    15 CSW01_06120 nucleotidyltransferase no 0.43
    16 CSW01_14695 glycerophosphodiester phosphodiesterase no 0.43
    17 CSW01_01210 LPS biosynthesis protein WavE no 0.43
    18 CSW01_16905 DedA family protein no 0.43
    19 CSW01_12530 YecA family protein no 0.42
    20 CSW01_06225 cytidine deaminase no 0.42

    Or look for negative cofitness