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  • Top cofit genes for CSW01_17175 from Vibrio cholerae E7946 ATCC 55056

    ABC transporter permease
    SEED: Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
    KEGG: microcin C transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 CSW01_16845 nuclease SbcCD subunit C no 0.50
    2 CSW01_19055 chemotaxis protein no 0.50
    3 CSW01_03475 ATP-dependent RNA helicase SrmB 0.62 0.49
    4 CSW01_10940 flagellin C no 0.48
    5 CSW01_16820 PTS fructose transporter subunit IIBC no 0.44
    6 CSW01_15315 carbonic anhydrase no 0.43
    7 CSW01_05355 DUF454 domain-containing protein 0.44 0.43
    8 CSW01_15375 hypothetical protein no 0.42
    9 CSW01_08360 ABC transporter substrate-binding protein no 0.42
    10 CSW01_03840 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.72 0.41
    11 CSW01_18845 maltose ABC transporter permease no 0.40
    12 CSW01_15000 rfbP protein no 0.40
    13 CSW01_14280 DUF3302 domain-containing protein no 0.40
    14 CSW01_18290 phenylalanine 4-monooxygenase no 0.39
    15 CSW01_05605 ABC transporter ATP-binding protein no 0.39
    16 CSW01_07720 DUF3802 domain-containing protein no 0.39
    17 CSW01_15260 hypothetical protein no 0.39
    18 CSW01_18330 drug/metabolite DMT transporter permease no 0.39
    19 CSW01_17880 hypothetical protein no 0.39
    20 CSW01_15085 lipase no 0.39

    Or look for negative cofitness