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  • Top cofit genes for CSW01_12260 from Vibrio cholerae E7946 ATCC 55056

    1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
    SEED: N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD
    KEGG: AmpD protein

    Rank Hit Name Description Conserved? Cofitness  
    1 CSW01_12875 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.93 0.78
    2 CSW01_03950 hypothetical protein 0.60 0.68
    3 CSW01_12405 GTP diphosphokinase 0.81 0.67
    4 CSW01_16950 ATP-dependent endonuclease no 0.65
    5 CSW01_07515 tail-specific protease 0.82 0.57
    6 CSW01_13155 ribonuclease R 0.87 0.56
    7 CSW01_10075 endolytic transglycosylase MltG 0.70 0.55
    8 CSW01_02775 glycerol-3-phosphate acyltransferase 0.46 0.54
    9 CSW01_03750 U32 family peptidase no 0.53
    10 CSW01_02500 deoxyribonuclease 0.61 0.52
    11 CSW01_05930 tryptophan synthase subunit beta 0.55 0.52
    12 CSW01_10145 ribonuclease E 0.90 0.51
    13 CSW01_17990 ATPase RavA stimulator ViaA 0.47 0.51
    14 CSW01_12900 DUF490 domain-containing protein 0.90 0.49
    15 CSW01_11225 flagellar basal body rod protein FlgB 0.51 0.49
    16 CSW01_18195 DUF3024 domain-containing protein no 0.49
    17 CSW01_07040 methyl-accepting chemotaxis protein no 0.48
    18 CSW01_10610 flagellar motor switch protein FliM 0.79 0.48
    19 CSW01_18745 AraC family transcriptional regulator no 0.48
    20 CSW01_19050 phosphoenolpyruvate synthase no 0.48

    Or look for negative cofitness