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  • Top cofit genes for CSW01_11960 from Vibrio cholerae E7946 ATCC 55056

    autonomous glycyl radical cofactor GrcA
    SEED: Pyruvate formate-lyase (EC 2.3.1.54)
    KEGG: autonomous glycyl radical cofactor

    Rank Hit Name Description Conserved? Cofitness  
    1 CSW01_01710 Rsd/AlgQ family anti-sigma factor no 0.63
    2 CSW01_17630 Fe(3+) ions import ATP-binding protein FbpC no 0.58
    3 CSW01_05480 hypothetical protein no 0.57
    4 CSW01_17255 nucleoside diphosphate kinase regulator no 0.56
    5 CSW01_17730 TMAO reductase system periplasmic protein TorT no 0.55
    6 CSW01_13220 hypothetical protein 0.24 0.55
    7 CSW01_06990 QacE family quaternary ammonium compound efflux SMR transporter no 0.53
    8 CSW01_19290 amino acid ABC transporter permease no 0.52
    9 CSW01_18770 DUF805 domain-containing protein no 0.51
    10 CSW01_16570 N-acetyltransferase 0.37 0.51
    11 CSW01_12545 5-formyltetrahydrofolate cyclo-ligase no 0.51
    12 CSW01_16460 acetyltransferase no 0.50
    13 CSW01_00980 hypothetical protein no 0.49
    14 CSW01_12940 DUF3299 domain-containing protein no 0.49
    15 CSW01_18390 sensor histidine kinase no 0.48
    16 CSW01_19355 rhodanese-like domain-containing protein no 0.48
    17 CSW01_14705 DUF3316 domain-containing protein no 0.48
    18 CSW01_15955 DUF3709 domain-containing protein no 0.48
    19 CSW01_03585 peptidylprolyl isomerase 0.32 0.46
    20 CSW01_04510 50S ribosomal protein L31 type B no 0.46

    Or look for negative cofitness