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  • Top cofit genes for CSW01_11715 from Vibrio cholerae E7946 ATCC 55056

    RNA polymerase subunit sigma
    SEED: RNA polymerase sigma-70 factor, ECF subfamily
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 CSW01_13510 HslU--HslV peptidase ATPase subunit 0.55 0.59
    2 CSW01_07605 molecular chaperone no 0.52
    3 CSW01_18550 non-hemolytic enterotoxin lytic component L1 no 0.52
    4 CSW01_04625 SecY-interacting protein no 0.51
    5 CSW01_08680 alpha/beta hydrolase 0.25 0.49
    6 CSW01_19270 3-deoxy-7-phosphoheptulonate synthase 0.48 0.48
    7 CSW01_04825 hypothetical protein no 0.47
    8 CSW01_11105 hypothetical protein no 0.47
    9 CSW01_13645 K+/H+ antiporter NhaP2 0.64 0.47
    10 CSW01_17515 beta-phosphoglucomutase family hydrolase no 0.46
    11 CSW01_18270 L-ectoine synthase no 0.46
    12 CSW01_18775 hypothetical protein no 0.45
    13 CSW01_02955 NADP-dependent oxidoreductase 0.40 0.45
    14 CSW01_00385 transcriptional regulator AsnC no 0.44
    15 CSW01_02870 CinA family protein no 0.44
    16 CSW01_19400 putrescine-ornithine antiporter no 0.43
    17 CSW01_16975 site-2 protease family protein no 0.43
    18 CSW01_06255 hypothetical protein no 0.42
    19 CSW01_15515 HNH endonuclease no 0.42
    20 CSW01_17530 anaerobic C4-dicarboxylate transporter DcuC no 0.42

    Or look for negative cofitness