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  • Top cofit genes for CSW01_08220 from Vibrio cholerae E7946 ATCC 55056

    16S rRNA pseudouridine(516) synthase
    SEED: Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70)
    KEGG: ribosomal small subunit pseudouridine synthase A

    Rank Hit Name Description Conserved? Cofitness  
    1 CSW01_14885 NupC/NupG family nucleoside CNT transporter no 0.50
    2 CSW01_18910 malate synthase no 0.47
    3 CSW01_08810 efflux RND transporter periplasmic adaptor subunit no 0.47
    4 CSW01_15195 PTS ascorbate-specific transporter subunit IIA no 0.46
    5 CSW01_18590 LysR family transcriptional regulator 0.59 0.46
    6 CSW01_07830 6-phospho-beta-glucosidase no 0.46
    7 CSW01_03935 cytoskeleton protein RodZ no 0.45
    8 CSW01_11140 transcriptional regulator no 0.45
    9 CSW01_01105 hypothetical protein 0.19 0.44
    10 CSW01_15705 DUF3265 domain-containing protein no 0.44
    11 CSW01_06840 amino acid ABC transporter ATP-binding protein 0.57 0.43
    12 CSW01_04535 N-acetyltransferase no 0.43
    13 CSW01_16120 N-acetyltransferase no 0.43
    14 CSW01_12595 2-isopropylmalate synthase no 0.43
    15 CSW01_02240 DUF2061 domain-containing protein no 0.43
    16 CSW01_17220 phosphonate utilization transcriptional regulator PhnR 0.26 0.43
    17 CSW01_06670 penicillin-binding protein no 0.42
    18 CSW01_04635 methionine ABC transporter substrate-binding protein MetQ 0.43 0.42
    19 CSW01_03685 ribosomal subunit interface protein no 0.42
    20 CSW01_10605 flagellar motor switch protein FliN 0.47 0.42

    Or look for negative cofitness