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  • Top cofit genes for CSW01_05195 from Vibrio cholerae E7946 ATCC 55056

    sigma-54-dependent Fis family transcriptional regulator
    SEED: Regulatory protein LuxO
    KEGG: two-component system, repressor protein LuxO

    Rank Hit Name Description Conserved? Cofitness  
    1 CSW01_03770 phosphate ABC transporter substrate-binding protein no 0.58
    2 CSW01_12815 RNA polymerase sigma-54 factor no 0.56
    3 CSW01_13430 succinate dehydrogenase/fumarate reductase iron-sulfur subunit no 0.55
    4 CSW01_01445 lysine decarboxylase no 0.53
    5 CSW01_03180 serine protease no 0.53
    6 CSW01_05805 ATP-dependent Clp protease ATP-binding subunit ClpA 0.33 0.50
    7 CSW01_10245 ABC transporter no 0.49
    8 CSW01_03785 phosphate ABC transporter permease no 0.49
    9 CSW01_13425 fumarate reductase (quinol) flavoprotein subunit no 0.49
    10 CSW01_01850 protease modulator HflC 0.46 0.49
    11 CSW01_05340 LysR family transcriptional regulator no 0.49
    12 CSW01_01435 transcriptional regulator CadC no 0.49
    13 CSW01_17855 autoinducer 2 sensor kinase/phosphatase LuxQ no 0.48
    14 CSW01_01845 protease modulator HflK 0.46 0.48
    15 CSW01_13440 fumarate reductase subunit D no 0.48
    16 CSW01_11390 class I SAM-dependent methyltransferase no 0.47
    17 CSW01_07450 Lon protease family protein no 0.47
    18 CSW01_04390 outer membrane protein assembly factor BamE no 0.47
    19 CSW01_04660 PTS trehalose transporter subunit IIBC no 0.47
    20 CSW01_01440 lysine:cadaverine antiporter no 0.47

    Or look for negative cofitness