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  • Top cofit genes for CSW01_04350 from Vibrio cholerae E7946 ATCC 55056

    accessory colonization factor AcfD
    SEED: Accessory colonization factor AcfD precursor

    Rank Hit Name Description Conserved? Cofitness  
    1 CSW01_04300 toxin coregulated pilus biosynthesis protein T no 0.72
    2 CSW01_04325 methyl-accepting chemotaxis protein no 0.67
    3 CSW01_04250 toxin coregulated pilus biosynthesis protein I no 0.67
    4 CSW01_04280 toxin coregulated pilus biosynthesis outer membrane protein C no 0.60
    5 CSW01_04195 class I SAM-dependent methyltransferase no 0.60
    6 CSW01_04245 2-Cys peroxiredoxin no 0.58
    7 CSW01_13620 aspartate ammonia-lyase no 0.57
    8 CSW01_01120 orotate phosphoribosyltransferase 0.47 0.56
    9 CSW01_01225 capsular biosynthesis protein no 0.55
    10 CSW01_04330 accessory colonization factor AcfC no 0.54
    11 CSW01_02735 integrase no 0.53
    12 CSW01_04225 aldehyde dehydrogenase no 0.53
    13 CSW01_04340 M23 family peptidase no 0.52
    14 CSW01_04435 hypothetical protein no 0.52
    15 CSW01_09560 orotidine-5'-phosphate decarboxylase 0.44 0.52
    16 CSW01_10190 nucleoid-associated protein 0.42 0.51
    17 CSW01_11535 thiamine-phosphate kinase no 0.51
    18 CSW01_10445 succinate dehydrogenase, hydrophobic membrane anchor protein no 0.51
    19 CSW01_01150 methyl-accepting chemotaxis protein no 0.50
    20 CSW01_12100 carbamoyl-phosphate synthase large chain 0.52 0.50

    Or look for negative cofitness