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  • Top cofit genes for CSW01_03675 from Vibrio cholerae E7946 ATCC 55056

    norspermidine sensor
    SEED: Predicted polyamine sensor NspS, involved in biofilm formation
    KEGG: putative spermidine/putrescine transport system substrate-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 CSW01_18010 cytochrome C554 no 0.61
    2 CSW01_12200 ribosomal RNA small subunit methyltransferase H no 0.61
    3 CSW01_11850 chorismate-binding protein no 0.59
    4 CSW01_17845 hypothetical protein no 0.58
    5 CSW01_06490 6-phospho-beta-glucosidase no 0.55
    6 CSW01_03670 biofilm architecture maintenance protein MbaA 0.75 0.55
    7 CSW01_05920 dicarboxylate/amino acid:cation symporter no 0.53
    8 CSW01_05235 GGDEF domain-containing protein no 0.53
    9 CSW01_14890 peptidase T no 0.53
    10 CSW01_05225 molybdopterin synthase sulfur carrier subunit no 0.52
    11 CSW01_08670 TVP38/TMEM64 family protein no 0.52
    12 CSW01_17275 large conductance mechanosensitive channel protein MscL no 0.50
    13 CSW01_12530 YecA family protein no 0.50
    14 CSW01_15825 hypothetical protein no 0.49
    15 CSW01_03680 bifunctional chorismate mutase/prephenate dehydratase no 0.49
    16 CSW01_03630 sensor histidine kinase no 0.49
    17 CSW01_03830 isocitrate lyase no 0.49
    18 CSW01_12565 acetolactate synthase 3 large subunit no 0.49
    19 CSW01_00600 heme biosynthesis operon protein HemX no 0.48
    20 CSW01_02060 methionine synthase no 0.48

    Or look for negative cofitness