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  • Top cofit genes for CSW01_01435 from Vibrio cholerae E7946 ATCC 55056

    transcriptional regulator CadC
    SEED: Transcriptional activator of cad operon
    KEGG: transcriptional activator of cad operon

    Rank Hit Name Description Conserved? Cofitness  
    1 CSW01_01445 lysine decarboxylase 0.60 0.89
    2 CSW01_01440 lysine:cadaverine antiporter 0.75 0.86
    3 CSW01_05340 LysR family transcriptional regulator no 0.83
    4 CSW01_07190 transcriptional regulator FNR no 0.83
    5 CSW01_13425 fumarate reductase (quinol) flavoprotein subunit no 0.78
    6 CSW01_13505 1,4-dihydroxy-2-naphthoate polyprenyltransferase no 0.78
    7 CSW01_13430 succinate dehydrogenase/fumarate reductase iron-sulfur subunit no 0.74
    8 CSW01_01845 protease modulator HflK 0.71 0.73
    9 CSW01_10165 bifunctional acetaldehyde-CoA/alcohol dehydrogenase no 0.72
    10 CSW01_04930 phosphoenolpyruvate-protein phosphotransferase PtsI 0.42 0.72
    11 CSW01_09350 formate C-acetyltransferase no 0.72
    12 CSW01_09365 pyruvate formate lyase 1-activating protein no 0.71
    13 CSW01_12815 RNA polymerase sigma-54 factor no 0.69
    14 CSW01_04660 PTS trehalose transporter subunit IIBC 0.71 0.68
    15 CSW01_13440 fumarate reductase subunit D no 0.63
    16 CSW01_01850 protease modulator HflC 0.68 0.60
    17 CSW01_17855 autoinducer 2 sensor kinase/phosphatase LuxQ no 0.57
    18 CSW01_09515 Na+/H+ antiporter NhaB 0.59 0.57
    19 CSW01_09955 L-asparaginase 1 0.37 0.56
    20 CSW01_11705 MFS transporter no 0.55

    Or look for negative cofitness