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  • Top cofit genes for CSW01_00740 from Vibrio cholerae E7946 ATCC 55056

    16S rRNA (guanine(966)-N(2))-methyltransferase RsmD
    SEED: 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171)
    KEGG: ribosomal RNA small subunit methyltransferase D

    Rank Hit Name Description Conserved? Cofitness  
    1 CSW01_08295 collagenase no 0.58
    2 CSW01_06860 siroheme synthase no 0.56
    3 CSW01_09735 LysR family transcriptional regulator no 0.54
    4 CSW01_07755 hypothetical protein no 0.54
    5 CSW01_02090 helix-turn-helix transcriptional regulator no 0.54
    6 CSW01_05915 thymidine kinase no 0.54
    7 CSW01_05120 sodium:proton antiporter 0.53 0.53
    8 CSW01_06825 acylphosphatase no 0.51
    9 CSW01_07860 ABC transporter permease no 0.51
    10 CSW01_11785 exonuclease V subunit gamma 0.27 0.51
    11 CSW01_07165 hypothetical protein no 0.51
    12 CSW01_05845 HDOD domain-containing protein no 0.50
    13 CSW01_12665 RDD family protein no 0.49
    14 CSW01_05115 amidophosphoribosyltransferase 0.75 0.49
    15 CSW01_04635 methionine ABC transporter substrate-binding protein MetQ 0.26 0.48
    16 CSW01_04705 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.66 0.48
    17 CSW01_10800 DUF2069 domain-containing protein no 0.48
    18 CSW01_03855 preprotein translocase subunit YajC 0.19 0.48
    19 CSW01_14890 peptidase T 0.64 0.47
    20 CSW01_10670 sigma-54-dependent Fis family transcriptional regulator 0.30 0.47

    Or look for negative cofitness