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  • Top cofit genes for CSW01_00280 from Vibrio cholerae E7946 ATCC 55056

    shikimate dehydrogenase
    SEED: Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)
    KEGG: shikimate dehydrogenase

    Rank Hit Name Description Conserved? Cofitness  
    1 CSW01_08445 ABC transporter substrate-binding protein 0.93 0.84
    2 CSW01_12360 TIGR00153 family protein no 0.83
    3 CSW01_01255 acyltransferase no 0.82
    4 CSW01_01360 sugar transferase no 0.82
    5 CSW01_01260 polysaccharide deacetylase no 0.82
    6 CSW01_01250 polymerase no 0.82
    7 CSW01_01270 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 0.56 0.82
    8 CSW01_01390 mannose-6-phosphate isomerase, class I no 0.81
    9 CSW01_01320 acyl-CoA reductase no 0.81
    10 CSW01_00215 potassium uptake protein TrkH no 0.81
    11 CSW01_01285 perosamine synthetase no 0.81
    12 CSW01_01290 rfbG protein no 0.81
    13 CSW01_01245 lipopolysaccharide heptosyltransferase II no 0.81
    14 CSW01_01315 NAD-dependent alcohol dehydrogenase no 0.81
    15 CSW01_01280 GDP-mannose 4,6-dehydratase 0.66 0.81
    16 CSW01_01275 phosphomannomutase/phosphoglucomutase 0.66 0.81
    17 CSW01_01310 long-chain fatty acid--CoA ligase no 0.81
    18 CSW01_01345 glycosyl transferase family 1 0.69 0.81
    19 CSW01_02835 RNA polymerase sigma factor RpoS no 0.80
    20 CSW01_01350 polysaccharide biosynthesis protein 0.70 0.80

    Or look for negative cofitness