Top cofit genes for BT4409 from Bacteroides thetaiotaomicron VPI-5482

DNA damage-inducible protein (NCBI ptt file)
SEED: DNA polymerase IV (EC 2.7.7.7)
KEGG: DNA polymerase IV

Rank	Hit	Name	Description	Conserved?	Cofitness
1	BT2183		conserved hypothetical protein (NCBI ptt file)	0.45	0.58
2	BT3266		excinuclease ABC subunit C (NCBI ptt file)	0.90	0.48
3	BT2400		DNA-3-methyladenine glycosylase I (NCBI ptt file)	0.27	0.43
4	BT3431		DNA repair protein (NCBI ptt file)	0.89	0.37
5	BT1739		excinuclease ABC subunit A (NCBI ptt file)	0.83	0.36
6	BT3982		ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member (NCBI ptt file)	0.76	0.33
7	BT4104		DNA helicase (NCBI ptt file)	no	0.32
8	BT0570		excinuclease ABC subunit B (NCBI ptt file)	0.84	0.31
9	BT0578		excinuclease ABC subunit A (NCBI ptt file)	0.89	0.27
10	BT0252		transcription-repair coupling factor (NCBI ptt file)	0.56	0.27
11	BT0183		transglycosylase (NCBI ptt file)	0.18	0.25
12	BT2237		conserved hypothetical protein (NCBI ptt file)	no	0.25
13	BT2168		coproporphyrinogen III oxidase (NCBI ptt file)	0.30	0.24
14	BT4255		DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file)	0.88	0.23
15	BT3335		hypothetical protein (NCBI ptt file)	no	0.22
16	BT2406		putative DNA repair protein (NCBI ptt file)	0.85	0.22
17	BT1081		recombination protein recR (NCBI ptt file)	0.86	0.20
18	BT2927		conserved hypothetical protein, putative cell wall-associated protein precursor (NCBI ptt file)	no	0.19
19	BT0525		outer membrane protein, function unknown (NCBI ptt file)	no	0.19
20	BT1413		putative transcription regulator (NCBI ptt file)	no	0.19

Or look for negative cofitness