Top cofit genes for BT4009 from Bacteroides thetaiotaomicron VPI-5482

integrase (NCBI ptt file)
SEED: integrase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	BT1479		ABC transporter ATP-binding protein (NCBI ptt file)	no	0.36
2	BT1439		Outer membrane binding protein for vancomycin (SusD-like) (from data)	no	0.36
3	BT0155		putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file)	no	0.35
4	BT3348		unsaturated glucuronide lyase acting on chondroitin/heparin disaccharides (EC 3.2.1.180) (from data)	no	0.35
5	BT3490		conserved hypothetical protein, putative ATPase (NCBI ptt file)	no	0.35
6	BT2573		glutamate/gamma-aminobutyrate anti-porter (NCBI ptt file)	no	0.34
7	BT1953		putative TonB-linked outer membrane receptor (NCBI ptt file)	no	0.34
8	p5482_19		hypothetical protein (NCBI)	no	0.33
9	BT4331		conserved hypothetical protein (NCBI ptt file)	no	0.32
10	BT4305		putative alpha-amylase (NCBI ptt file)	no	0.32
11	BT2146		4-alpha-glucanotransferase (NCBI ptt file)	no	0.32
12	BT3235		conserved hypothetical protein (NCBI ptt file)	no	0.32
13	BT4658		glucuronyl hydrolase (NCBI ptt file)	no	0.32
14	BT4535		Type I restriction enzyme EcoR124II R protein (NCBI ptt file)	no	0.32
15	BT3858		conserved hypothetical protein (NCBI ptt file)	no	0.31
16	BT4043		dimethyladenosine transferase (NCBI ptt file)	no	0.31
17	BT1480		hypothetical protein (NCBI ptt file)	no	0.31
18	BT3689		conserved hypothetical protein (NCBI ptt file)	no	0.31
19	BT0180		5-methyltetrahydrofolate-homocysteine methyltransferase (NCBI ptt file)	no	0.31
20	BT4538		Type I restriction enzyme EcoR124II M protein (NCBI ptt file)	no	0.31

Or look for negative cofitness