Top cofit genes for BT3396 from Bacteroides thetaiotaomicron VPI-5482

RNA polymerase ECF-type sigma factor (NCBI ptt file)
SEED: RNA polymerase ECF-type sigma factor

Rank	Hit	Name	Description	Conserved?	Cofitness
1	BT2411		hypothetical protein (NCBI ptt file)	0.63	0.55
2	BT2412		putative collagenase (NCBI ptt file)	0.62	0.49
3	BT3397		hypothetical protein (NCBI ptt file)	0.56	0.36
4	BT2040		hypothetical protein (NCBI ptt file)	no	0.35
5	BT3191		hypothetical protein (NCBI ptt file)	no	0.31
6	BT3247		conserved hypothetical protein (NCBI ptt file)	0.41	0.29
7	BT2936		putative glycosyltransferase (NCBI ptt file)	no	0.28
8	BT3645		two-component system sensor histidine kinase (NCBI ptt file)	no	0.28
9	BT3525		hypothetical protein (NCBI ptt file)	no	0.27
10	BT2435		MarR family transcriptional regulator (NCBI ptt file)	no	0.27
11	BT1292		thiol:disulfide interchange protein (NCBI ptt file)	no	0.27
12	p5482_12		TraI-like protein (NCBI)	no	0.26
13	BT1198		LemA protein (NCBI ptt file)	no	0.25
14	BT4126		flavoprotein (NCBI ptt file)	no	0.25
15	BT3729		putative protoporphyrinogen oxidase (NCBI ptt file)	no	0.25
16	BT0252		transcription-repair coupling factor (NCBI ptt file)	no	0.25
17	BT3843		ATP-dependent Clp protease ATP-binding subunit (NCBI ptt file)	0.38	0.25
18	BT3356		6-phosphofructokinase (NCBI ptt file)	no	0.25
19	BT1917		propionyl-CoA carboxylase beta chain (NCBI ptt file)	no	0.25
20	BT4697		transcriptional regulator (NCBI ptt file)	no	0.25

Or look for negative cofitness