Top cofit genes for BT3302 from Bacteroides thetaiotaomicron VPI-5482

two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file)
SEED: DNA-binding response regulator, AraC family

Rank	Hit	Name	Description	Conserved?	Cofitness
1	BT2859		putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file)	no	0.43
2	BT2852		putative beta-xylosidase (NCBI ptt file)	no	0.43
3	BT1542		putative pyridine nucleotide-disulfide oxidoreductase (NCBI ptt file)	no	0.42
4	BT3103		putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file)	no	0.40
5	BT3380		putative membrane protein (NCBI ptt file)	no	0.39
6	BT3555		conserved hypothetical protein (NCBI ptt file)	no	0.39
7	BT0037		putative transcriptional regulatory protein (NCBI ptt file)	no	0.39
8	BT3906		conserved hypothetical protein (NCBI ptt file)	no	0.39
9	BT2855		beta-mannosidase precursor (NCBI ptt file)	no	0.38
10	BT3047		hypothetical protein (NCBI ptt file)	no	0.38
11	BT3986		putative patatin-like protein (NCBI ptt file)	no	0.38
12	BT0150		putative ferric aerobactin receptor (NCBI ptt file)	no	0.37
13	BT3742		hypothetical protein (NCBI ptt file)	no	0.37
14	BT3100		lipase, putative esterase (NCBI ptt file)	no	0.37
15	BT2858		putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file)	no	0.37
16	BT3296		conserved hypothetical protein, putative outer membrane protein (NCBI ptt file)	no	0.37
17	BT3295		hypothetical protein (NCBI ptt file)	no	0.37
18	BT2651		conserved hypothetical protein (NCBI ptt file)	no	0.36
19	BT3701	SusD	SusD, outer membrane protein (NCBI ptt file)	no	0.36
20	BT2854		periplasmic beta-glucosidase precursor (NCBI ptt file)	no	0.36

Or look for negative cofitness