Top cofit genes for BT2741 from Bacteroides thetaiotaomicron VPI-5482

sigma-54 modulation protein (NCBI ptt file)
SEED: Ribosome hibernation protein YhbH

Rank	Hit	Name	Description	Conserved?	Cofitness
1	BT0183		transglycosylase (NCBI ptt file)	0.41	0.51
2	BT4706		putative anti-sigma factor (NCBI ptt file)	no	0.48
3	BT3992		putative anti-sigma factor (NCBI ptt file)	no	0.48
4	BT1747		pyruvate-flavodoxin oxidoreductase (NCBI ptt file)	no	0.45
5	BT0900		putative tetratricopeptide repeat family protein (NCBI ptt file)	no	0.45
6	BT0173		conserved hypothetical protein (NCBI ptt file)	0.64	0.44
7	BT2840		O-methyltransferase (NCBI ptt file)	0.36	0.44
8	BT4041		conserved hypothetical protein (NCBI ptt file)	no	0.41
9	BT4638		conserved hypothetical protein (NCBI ptt file)	no	0.41
10	BT2059		TonB (NCBI ptt file)	no	0.40
11	BT0619		Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfD (NCBI ptt file)	no	0.40
12	BT3000		conserved hypothetical protein (NCBI ptt file)	no	0.39
13	BT3335		hypothetical protein (NCBI ptt file)	no	0.39
14	BT2270		integral membrane protein (MarC family) (NCBI ptt file)	no	0.39
15	BT1530		putative outer membrane protein OprM precursor (NCBI ptt file)	no	0.39
16	BT4300		transcription regulator, CRP family (NCBI ptt file)	0.62	0.39
17	BT2779		3-demethylubiquinone-9 3-methyltransferase (NCBI ptt file)	no	0.39
18	BT4043		dimethyladenosine transferase (NCBI ptt file)	0.77	0.39
19	BT4697		transcriptional regulator (NCBI ptt file)	0.42	0.39
20	BT1973		NAD-specific glutamate dehydrogenase (NCBI ptt file)	no	0.38

Or look for negative cofitness