Top cofit genes for BT2609 from Bacteroides thetaiotaomicron VPI-5482

conserved protein found in conjugate transposon (NCBI ptt file)
SEED: Conjugative transposon protein TraA

Rank	Hit	Name	Description	Conserved?	Cofitness
1	BT3819		conserved hypothetical protein (NCBI ptt file)	no	0.30
2	BT2406		putative DNA repair protein (NCBI ptt file)	no	0.29
3	BT3897		putative thiol:disulfide interchange protein DsbE (NCBI ptt file)	no	0.28
4	BT3613		LacI family transcriptional regulator (NCBI ptt file)	no	0.27
5	BT2669		hypothetical protein (NCBI ptt file)	no	0.27
6	p5482_15		TraM-like protein (NCBI)	no	0.27
7	BT0980		conserved hypothetical protein (NCBI ptt file)	no	0.27
8	BT3124		putative sialic acid-specific acetylesterase (NCBI ptt file)	no	0.26
9	BT1193		conserved hypothetical protein (NCBI ptt file)	no	0.26
10	BT2364		putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file)	no	0.26
11	BT3113		putative transmembrane efflux protein (NCBI ptt file)	no	0.26
12	BT2595		conserved protein found in conjugate transposon (NCBI ptt file)	no	0.26
13	BT2965		hypothetical protein (NCBI ptt file)	no	0.26
14	BT2444		hypothetical protein (NCBI ptt file)	no	0.25
15	BT3186		dihydrolipoamide dehydrogenase (NCBI ptt file)	no	0.25
16	BT2949		putative alpha-1,6-mannanase (NCBI ptt file)	no	0.25
17	BT3607		hypothetical protein (NCBI ptt file)	no	0.25
18	BT4330		xanthosine permease (NCBI ptt file)	no	0.25
19	BT2421		FrrC, osmosensitive K+ channel histidine kinase (NCBI ptt file)	no	0.25
20	BT4432		putative non-specific DNA-binding protein HU-1 (NCBI ptt file)	no	0.25

Or look for negative cofitness