Top cofit genes for BT2288 from Bacteroides thetaiotaomicron VPI-5482

conserved protein found in conjugate transposon (NCBI ptt file)
SEED: Conjugative transposon protein TraO

Rank	Hit	Name	Description	Conserved?	Cofitness
1	BT3251		conserved hypothetical protein, putative integral membrane protein (NCBI ptt file)	no	0.62
2	BT1559		RNA polymerase ECF-type sigma factor (NCBI ptt file)	no	0.58
3	BT0239		hypothetical protein (NCBI ptt file)	no	0.54
4	p5482_03		hypothetical protein (NCBI)	no	0.53
5	BT0654		two-component sensor histidine kinase (NCBI ptt file)	no	0.53
6	BT1532		ABC transporter permease (NCBI ptt file)	no	0.53
7	BT3262		hypothetical protein (NCBI ptt file)	no	0.52
8	BT1528		two-component system sensor histidine kinase (NCBI ptt file)	no	0.51
9	BT1981		hypothetical protein (NCBI ptt file)	no	0.51
10	BT1529		two-component system response regulator (NCBI ptt file)	no	0.51
11	BT4187		exo-alpha-D-galacturonosidase for catabolism of rhamnogalacturonan I and polygalacturonate (from data)	no	0.50
12	BT2418		hypothetical protein (NCBI ptt file)	0.48	0.50
13	BT1533		conserved hypothetical protein (NCBI ptt file)	no	0.50
14	p5482_35		hypothetical protein (NCBI)	no	0.47
15	p5482_12		TraI-like protein (NCBI)	no	0.47
16	p5482_38		DNA primase (NCBI)	no	0.46
17	BT3250		conserved hypothetical protein (NCBI ptt file)	no	0.46
18	BT4523		Type I restriction enzyme EcoR124II specificity protein (NCBI ptt file)	no	0.46
19	BT2821		putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file)	no	0.46
20	BT2039		cation efflux system protein, AcrB/AcrD/AcrF family protein (NCBI ptt file)	no	0.45

Or look for negative cofitness