Top cofit genes for BT1278 from Bacteroides thetaiotaomicron VPI-5482

RNA polymerase ECF-type sigma factor (NCBI ptt file)
SEED: RNA polymerase ECF-type sigma factor

Rank	Hit	Name	Description	Conserved?	Cofitness
1	BT4583		peptidase T (tripeptide aminopeptidase) (NCBI ptt file)	no	0.34
2	BT2899		hypothetical protein (NCBI ptt file)	no	0.34
3	BT4173		putative rhamnogalacturonan acetylesterase (NCBI ptt file)	no	0.34
4	BT2498		putative outer membrane efflux protein (NCBI ptt file)	no	0.33
5	BT2263		hypothetical protein (NCBI ptt file)	no	0.33
6	BT1952		Fe3+ ABC transporter, periplasmic iron-binding protein (NCBI ptt file)	no	0.33
7	BT0353		putative sugar epimerase/aldolase (NCBI ptt file)	no	0.33
8	BT0335		putative ATPase (NCBI ptt file)	no	0.32
9	BT4599		putative transcriptional regulator (NCBI ptt file)	no	0.32
10	BT2386		AsnC family transcriptional regulator (NCBI ptt file)	no	0.32
11	BT3236		hypothetical protein (NCBI ptt file)	no	0.32
12	BT3235		conserved hypothetical protein (NCBI ptt file)	no	0.32
13	BT4379		putative oxalate:formate antiporter (NCBI ptt file)	no	0.32
14	BT2495		ABC transporter, putative permease (NCBI ptt file)	no	0.32
15	BT0350		ribulokinase (EC 2.7.1.16) (from data)	no	0.31
16	BT3687		conserved hypothetical protein (NCBI ptt file)	no	0.31
17	BT3515		putatuve glycosylhydrolase (NCBI ptt file)	no	0.31
18	BT1439		Outer membrane binding protein for vancomycin (SusD-like) (from data)	no	0.31
19	BT4667		beta-galactosidase (NCBI ptt file)	no	0.30
20	BT2496		putative ABC transporter, ATP-binding protein (NCBI ptt file)	no	0.30

Or look for negative cofitness