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Cofit
Protein
Homologs
Top cofit genes for BT1021 from
Bacteroides thetaiotaomicron VPI-5482
arabinosidase (NCBI ptt file)
SEED: arabinosidase
Rank
Hit
Name
Description
Conserved?
Cofitness
1
BT3046
putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file)
no
0.49
2
BT2852
putative beta-xylosidase (NCBI ptt file)
no
0.46
3
BT3700
SusE
SusE: Outer membrane amylopectin-binding protein
(from data)
no
0.45
4
BT4670
putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file)
no
0.45
5
BT3045
hypothetical protein (NCBI ptt file)
no
0.45
6
BT2855
beta-mannosidase precursor (NCBI ptt file)
no
0.44
7
BT3705
SusR
regulatory protein SusR (NCBI ptt file)
no
0.42
8
BT4673
two-component system sensor histidine kinase (NCBI ptt file)
no
0.41
9
BT3702
SusC
SusC, outer membrane protein involved in starch binding (NCBI ptt file)
no
0.41
10
BT2774
putative adenylate cyclase (NCBI ptt file)
no
0.41
11
BT3703
SusB
alpha-glucosidase SusB (NCBI ptt file)
no
0.40
12
BT2857
hypothetical protein (NCBI ptt file)
no
0.40
13
BT4693
cation efflux system protein (NCBI ptt file)
no
0.40
14
BT2853
hypothetical protein (NCBI ptt file)
no
0.39
15
BT0902
hypothetical protein (NCBI ptt file)
no
0.38
16
BT1877
RNA polymerase ECF-type sigma factor (NCBI ptt file)
no
0.38
17
BT2854
periplasmic beta-glucosidase precursor (NCBI ptt file)
no
0.38
18
BT2743
putative aminopeptidase (NCBI ptt file)
no
0.38
19
BT3701
SusD
SusD, outer membrane protein (NCBI ptt file)
no
0.38
20
BT0012
conserved hypothetical protein (NCBI ptt file)
no
0.37
Or look for
negative cofitness