Top cofit genes for Rru_A3599 from Rhodospirillum rubrum S1H

20S proteasome, A and B subunits (NCBI)
SEED: ATP-dependent protease HslV (EC 3.4.25.-)
KEGG: ATP-dependent HslUV protease, peptidase subunit HslV

Rank	Hit	Name	Description	Conserved?	Cofitness
1	Rru_A0686		Transcriptional Regulator, LysR family (NCBI)	no	0.65
2	Rru_A2895		Twin-arginine translocation pathway signal (NCBI)	0.62	0.63
3	Rru_A0337		Predicted transcriptional regulator (NCBI)	no	0.58
4	Rru_A1654		Response regulator receiver domain protein (CheY) (NCBI)	no	0.57
5	Rru_A0611		hypothetical protein (NCBI)	no	0.55
6	Rru_A1460		Asparagine synthase (NCBI)	no	0.54
7	Rru_A2894		ABC transporter component (NCBI)	0.55	0.53
8	Rru_A1180		Major facilitator superfamily MFS_1 (NCBI)	no	0.53
9	Rru_A1217		Phage shock B (NCBI)	no	0.53
10	Rru_A0525		Two component Transcriptional regulator, Winged helix family (NCBI)	0.44	0.52
11	Rru_A0846		hypothetical protein (NCBI)	no	0.51
12	Rru_A2057		Molybdopterin-guanine dinucleotide biosynthesis MobB region (NCBI)	0.53	0.50
13	Rru_A1683		HAD-superfamily hydrolase, subfamily IA, variant 1 (NCBI)	no	0.50
14	Rru_A1866		Lytic transglycosylase, catalytic (NCBI)	no	0.50
15	Rru_A3705		Cell divisionFtsK/SpoIIIE (NCBI)	no	0.50
16	Rru_A3527		Protein of unknown function YGGT (NCBI)	no	0.49
17	Rru_A1999		hypothetical protein (NCBI)	no	0.49
18	Rru_A3453		ABC transporter component (NCBI)	0.23	0.49
19	Rru_A1112		hypothetical protein (NCBI)	no	0.49
20	Rru_A2988		Precorrin-6X reductase (NCBI)	0.56	0.49

Or look for negative cofitness