Top cofit genes for Rru_A3316 from Rhodospirillum rubrum S1H

Phage integrase (NCBI)
SEED: Integrase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	Rru_A0511		DEAD/DEAH box helicase (NCBI)	no	0.73
2	Rru_A0241		DNA methylase N-4/N-6 (NCBI)	no	0.68
3	Rru_A3313		minor capsid protein 10 (NCBI)	no	0.68
4	Rru_A3753		hypothetical protein (NCBI)	no	0.66
5	Rru_A3342		Dihydrodipicolinate synthase subfamily (NCBI)	no	0.66
6	Rru_A3021		hypothetical protein (NCBI)	no	0.65
7	Rru_A3314		Uncharacterized phage-encoded protein-like (NCBI)	no	0.64
8	Rru_A2993		hypothetical protein (NCBI)	no	0.64
9	Rru_A0810		hypothetical protein (NCBI)	no	0.63
10	Rru_A3715		Lipopolysaccharide biosynthesis (NCBI)	no	0.61
11	Rru_A1121		Pyruvate carboxylase (NCBI)	no	0.61
12	Rru_A1862		hypothetical protein (NCBI)	no	0.60
13	Rru_A0478		Radical SAM (NCBI)	no	0.59
14	Rru_A0934		hypothetical protein (NCBI)	no	0.59
15	Rru_A0765		hypothetical protein (NCBI)	no	0.58
16	Rru_A0094		Binding-protein-dependent transport systems inner membrane component (NCBI)	no	0.58
17	Rru_A0502		hypothetical protein (NCBI)	no	0.57
18	Rru_A1267		Carbohydrate kinase, FGGY (NCBI)	no	0.57
19	Rru_A2533		Flagellar hook capping protein (NCBI)	no	0.57
20	Rru_A0140		Transcriptional Regulator, AraC family (NCBI)	no	0.57

Or look for negative cofitness