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  • Top cofit genes for Rru_A2171 from Rhodospirillum rubrum S1H

    Extracellular ligand-binding receptor (NCBI)
    SEED: Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1)

    Rank Hit Name Description Conserved? Cofitness  
    1 Rru_A3509 AMP-dependent synthetase and ligase (NCBI) no 0.63
    2 Rru_A0997 NifZ (NCBI) no 0.62
    3 Rru_A0025 hypothetical protein (NCBI) no 0.61
    4 Rru_A2016 hypothetical protein (NCBI) no 0.61
    5 Rru_A0134 Succinic semialdehyde dehydrogenase (NCBI) no 0.60
    6 Rru_A2200 DNA polymerase III chi subunit, HolC (NCBI) no 0.59
    7 Rru_A2782 Transcriptional Regulator, LysR family (NCBI) no 0.59
    8 Rru_A1059 Aldo/keto reductase (NCBI) no 0.58
    9 Rru_AR0042 5S ribosomal RNA (NCBI) no 0.57
    10 Rru_A1834 Enoyl-CoA hydratase/isomerase (NCBI) no 0.56
    11 Rru_A2253 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI) no 0.56
    12 Rru_A1079 sodium/hydrogen exchanger (NCBI) no 0.56
    13 Rru_A3206 Response regulator receiver domain protein (CheY) (NCBI) no 0.56
    14 Rru_A2049 Transcriptional Regulator, TetR family (NCBI) no 0.56
    15 Rru_A0162 Chaperonin Cpn60/TCP-1 (NCBI) no 0.54
    16 Rru_A2251 extracellular solute-binding protein, family 3 (NCBI) no 0.54
    17 Rru_A1340 Glycerone kinase (NCBI) no 0.54
    18 Rru_A2223 Branched-chain amino acid aminotransferase I (NCBI) no 0.54
    19 Rru_A0124 Putative diguanylate phosphodiesterase (EAL domain) (NCBI) no 0.54
    20 Rru_A0297 Putative esterase (NCBI) no 0.53

    Or look for negative cofitness