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  • Top cofit genes for Rru_A0860 from Rhodospirillum rubrum S1H

    RND efflux system, outer membrane lipoprotein, NodT (NCBI)
    SEED: Outer membrane component of tripartite multidrug resistance system

    Rank Hit Name Description Conserved? Cofitness  
    1 Rru_A2119 Molybdopterin oxidoreductase (NCBI) 0.27 0.70
    2 Rru_A2736 hypothetical protein (NCBI) no 0.68
    3 Rru_A0162 Chaperonin Cpn60/TCP-1 (NCBI) no 0.68
    4 Rru_A2242 Glutathione-dependent formaldehyde-activating, GFA (NCBI) no 0.65
    5 Rru_A2658 haloacid dehalogenase-like hydrolase (NCBI) no 0.65
    6 Rru_A2023 chemotaxis sensory transducer (NCBI) no 0.64
    7 Rru_A3003 Transcriptional Regulator, GntR family (NCBI) no 0.64
    8 Rru_A0839 Transcriptional Regulator, AraC family (NCBI) 0.24 0.63
    9 Rru_A2007 Protein of unknown function DUF6, transmembrane (NCBI) no 0.62
    10 Rru_A3372 tRNA/rRNA methyltransferase (SpoU) (NCBI) no 0.62
    11 Rru_A0868 peptidase C14, caspase catalytic subunit p20 (NCBI) no 0.62
    12 Rru_A1321 Biotin--acetyl-CoA-carboxylase ligase (NCBI) no 0.60
    13 Rru_A1338 inner-membrane translocator (NCBI) no 0.59
    14 Rru_A3182 Auxin Efflux Carrier (NCBI) no 0.59
    15 Rru_A1260 ABC transporter component (NCBI) 0.51 0.58
    16 Rru_A2511 Putative diguanylate cyclase (GGDEF domain) (NCBI) no 0.57
    17 Rru_A1954 Secretion protein HlyD (NCBI) 0.95 0.57
    18 Rru_A1688 hypothetical protein (NCBI) 0.47 0.57
    19 Rru_A0376 Transcriptional Regulator, LytR/AlgR family (NCBI) no 0.55
    20 Rru_A1281 hypothetical protein (NCBI) no 0.55

    Or look for negative cofitness