Top cofit genes for Rru_A0554 from Rhodospirillum rubrum S1H

Rh-like protein/ammonium transporter (NCBI)
SEED: Ammonium transporter

Rank	Hit	Name	Description	Conserved?	Cofitness
1	Rru_A3167		Binding-protein-dependent transport systems inner membrane component (NCBI)	0.31	0.86
2	Rru_A3322		Transcriptional Regulator, Crp/Fnr family (NCBI)	0.66	0.82
3	Rru_A2901		Histidine triad (HIT) protein (NCBI)	0.52	0.81
4	Rru_A3166		extracellular solute-binding protein, family 5 (NCBI)	0.34	0.80
5	Rru_A3148		Protein of unknown function DUF323 (NCBI)	no	0.79
6	Rru_A2109		ATP-dependent Clp protease ATP-binding subunit ClpA (NCBI)	0.58	0.79
7	Rru_A1803		Undecaprenol kinase (NCBI)	0.31	0.79
8	Rru_A3168		Binding-protein-dependent transport systems inner membrane component (NCBI)	0.30	0.76
9	Rru_A2166		hypothetical protein (NCBI)	no	0.76
10	Rru_A0371		Double-transmembrane region-like (NCBI)	no	0.76
11	Rru_A2440		NADH:ubiquinone oxidoreductase 17.2 kD subunit (NCBI)	no	0.76
12	Rru_A1357		Transaldolase AB (NCBI)	0.44	0.76
13	Rru_A1804		N-acetyltransferase (NCBI)	0.40	0.76
14	Rru_A1536		UvrD/REP helicase (NCBI)	no	0.75
15	Rru_A1692		S-adenosylmethionine decarboxylase related (NCBI)	no	0.75
16	Rru_A2496		Polysaccharide biosynthesis protein (NCBI)	no	0.75
17	Rru_A0406		DNA repair protein RadA (NCBI)	no	0.74
18	Rru_A3694		hypothetical protein (NCBI)	no	0.74
19	Rru_A3386		BioY protein (NCBI)	no	0.74
20	Rru_A2466		Glyoxalase/bleomycin resistance protein/dioxygenase (NCBI)	no	0.74

Or look for negative cofitness