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  • Top cofit genes for Rru_A0275 from Rhodospirillum rubrum S1H

    Alpha/beta hydrolase fold (NCBI)
    SEED: Polyhydroxyalkanoic acid synthase
    KEGG: polyhydroxyalkanoate synthase

    Rank Hit Name Description Conserved? Cofitness  
    1 Rru_A3203 ribonuclease R (NCBI) no 0.77
    2 Rru_A1855 hypothetical protein (NCBI) no 0.74
    3 Rru_A1854 Pyridoxal phosphate biosynthetic protein PdxJ (NCBI) no 0.71
    4 Rru_A2413 Poly(R)-hydroxyalkanoic acid synthase, class I (NCBI) 0.54 0.71
    5 Rru_A0432 4-hydroxythreonine-4-phosphate dehydrogenase (NCBI) no 0.69
    6 Rru_A2265 Electron transfer flavoprotein-ubiquinone oxidoreductase (NCBI) no 0.63
    7 Rru_A2266 Electron transfer flavoprotein (NCBI) no 0.63
    8 Rru_A2264 ferredoxin (NCBI) no 0.62
    9 Rru_A2267 Electron transfer flavoprotein beta-subunit (NCBI) no 0.61
    10 Rru_A3202 DNA topoisomerase (NCBI) no 0.59
    11 Rru_A1607 4-alpha-glucanotransferase (NCBI) no 0.57
    12 Rru_A1411 Protein of unknown function DUF162 (NCBI) no 0.56
    13 Rru_A0258 Peptidase M48, Ste24p (NCBI) no 0.56
    14 Rru_A2559 hypothetical protein (NCBI) 0.44 0.56
    15 Rru_A0314 NADH dehydrogenase (quinone) (NCBI) no 0.55
    16 Rru_A3634 Protein of unknown function UPF0001 (NCBI) no 0.55
    17 Rru_A1606 Glycogen debranching enzyme GlgX (NCBI) no 0.55
    18 Rru_A0664 Signal Transduction Histidine Kinase (NCBI) no 0.54
    19 Rru_A1605 Alpha amylase, catalytic region (NCBI) no 0.53
    20 Rru_A2411 Aminotransferase, class I and II (NCBI) no 0.53

    Or look for negative cofitness