Top cofit genes for Rru_B0040 from Rhodospirillum rubrum S1H

Type I secretion membrane fusion protein, HlyD (NCBI)
SEED: HLYD FAMILY SECRETION PROTEIN

Rank	Hit	Name	Description	Conserved?	Cofitness
1	Rru_B0039		Type I secretion system ATPase, PrtD (NCBI)	0.96	0.91
2	Rru_B0037		Hemolysin-type calcium-binding region (NCBI)	no	0.90
3	Rru_A1445		Ribonucleoside-diphosphate reductase (NCBI)	no	0.88
4	Rru_A2715		Acyltransferase 3 (NCBI)	no	0.79
5	Rru_A2345		Glycosyl transferase, group 1 (NCBI)	no	0.77
6	Rru_A0253		GDP-mannose 4,6-dehydratase (NCBI)	0.54	0.77
7	Rru_A1444		Ribonucleoside-diphosphate reductase (NCBI)	no	0.77
8	Rru_A2351		Macrocin-O-methyltransferase (NCBI)	no	0.76
9	Rru_A2348		Glycosyl transferase (NCBI)	no	0.76
10	Rru_A2347		hypothetical protein (NCBI)	no	0.74
11	Rru_B0042		hypothetical protein (NCBI)	no	0.74
12	Rru_A2349		hypothetical protein (NCBI)	no	0.71
13	Rru_A0089		ATP-dependent DNA helicase RecQ (NCBI)	0.35	0.66
14	Rru_A1718		5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase (NCBI)	no	0.66
15	Rru_A2900		Protein of unknown function DUF6, transmembrane (NCBI)	no	0.65
16	Rru_A1194		Protein of unknown function DUF134 (NCBI)	no	0.63
17	Rru_B0043		hypothetical protein (NCBI)	no	0.59
18	Rru_A3003		Transcriptional Regulator, GntR family (NCBI)	no	0.59
19	Rru_A3571		Glycerol-3-phosphate dehydrogenase (NAD(P)+) (NCBI)	0.46	0.58
20	Rru_A1839		TRAP-type C4-dicarboxylate transport system periplasmic component-like (NCBI)	no	0.58

Or look for negative cofitness