Top cofit genes for Rru_B0024 from Rhodospirillum rubrum S1H

RepA-related protein (NCBI)
SEED: Plasmid replication initiator protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	Rru_A2252		Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI)	no	0.71
2	Rru_A3396		Autoinducer synthesis protein (NCBI)	no	0.70
3	Rru_A2251		extracellular solute-binding protein, family 3 (NCBI)	no	0.65
4	Rru_A2049		Transcriptional Regulator, TetR family (NCBI)	no	0.62
5	Rru_A2223		Branched-chain amino acid aminotransferase I (NCBI)	no	0.61
6	Rru_A0435		Acyl-CoA dehydrogenase (NCBI)	no	0.60
7	Rru_A3395		Transcriptional Regulator, LuxR family (NCBI)	no	0.60
8	Rru_A3285		Response regulator receiver domain protein (CheY) (NCBI)	no	0.58
9	Rru_A1049		GGDEF family protein (NCBI)	no	0.58
10	Rru_A0426		hypothetical protein (NCBI)	no	0.57
11	Rru_A1312		AMP-dependent synthetase and ligase (NCBI)	no	0.57
12	Rru_A0741		Signal Transduction Histidine Kinase (NCBI)	no	0.57
13	Rru_A2100		Protein of unknown function DUF81 (NCBI)	no	0.55
14	Rru_A3079		3-hydroxybutyryl-CoA dehydrogenase (NCBI)	no	0.55
15	Rru_A1552		Peptidase S16, ATP-dependent protease La (NCBI)	no	0.54
16	Rru_A2427		LrgB-like protein (NCBI)	no	0.54
17	Rru_A1834		Enoyl-CoA hydratase/isomerase (NCBI)	no	0.54
18	Rru_A1316		AMP-dependent synthetase and ligase (NCBI)	no	0.54
19	Rru_A2370		GCN5-related N-acetyltransferase (NCBI)	no	0.53
20	Rru_A1473		hypothetical protein (NCBI)	no	0.53

Or look for negative cofitness