Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17700

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,810,293	+		DZA65_RS17695	0.28	-0.4
3,810,351	-		DZA65_RS17695	0.33	-1.9
3,810,435	+		DZA65_RS17695	0.41	-1.1
3,810,436	-		DZA65_RS17695	0.41	-1.2
3,810,436	-		DZA65_RS17695	0.41	+0.4
3,810,689	+		DZA65_RS17695	0.64	-0.9
3,810,704	+		DZA65_RS17695	0.65	-0.6
3,810,705	-		DZA65_RS17695	0.65	-0.3
3,810,717	+		DZA65_RS17695	0.66	-0.9
3,810,718	-		DZA65_RS17695	0.66	-1.7
3,810,718	-		DZA65_RS17695	0.66	-1.5
3,810,718	-		DZA65_RS17695	0.66	-2.3
3,810,808	+		DZA65_RS17695	0.75	-3.2
3,810,809	-		DZA65_RS17695	0.75	-0.2
3,810,809	-		DZA65_RS17695	0.75	-1.9
3,811,008	-				-0.7
3,811,008	-				-1.7
3,811,019	+				-1.2
3,811,062	+				-2.6
3,811,113	+				-2.6
3,811,113	+				-1.6
3,811,113	+				-1.9
3,811,113	+				-2.1
3,811,114	-				+0.2
3,811,114	-				+0.1
3,811,114	-				+0.8
3,811,115	+				-1.9
3,811,115	+				-0.9
3,811,115	+				-1.0
3,811,116	-				-0.9
3,811,116	-				+1.3
3,811,116	-				-0.7
3,811,116	-				+0.3
3,811,116	-				-0.1
3,811,119	+				+0.1
3,811,119	+				-2.1
3,811,119	+				-0.2
3,811,119	+				+2.1
3,811,119	+				-0.9
3,811,120	-				+1.7
3,811,120	-				-0.6
3,811,120	-				-2.5
3,811,123	+				-0.7
3,811,123	+				-1.4
3,811,123	+				-0.6
3,811,124	-				-0.7
3,811,124	-				+1.5
3,811,124	-				+0.5
3,811,124	-				+0.3
3,811,129	+				-0.0
3,811,141	+				-1.8
3,811,141	+				-1.2
3,811,142	-				+0.3
3,811,142	-				-0.4
3,811,158	+				-1.0
3,811,159	-				+0.3
3,811,211	+				-0.7
3,811,211	+				-0.3
3,811,211	+				+0.7
3,811,212	-				+0.0
3,811,212	-				-0.9
3,811,255	+		DZA65_RS17700	0.11	+0.4
3,811,255	+		DZA65_RS17700	0.11	+2.7
3,811,255	+		DZA65_RS17700	0.11	+0.4
3,811,256	-		DZA65_RS17700	0.11	+0.0
3,811,256	-		DZA65_RS17700	0.11	+1.7
3,811,256	-		DZA65_RS17700	0.11	+1.0
3,811,256	-		DZA65_RS17700	0.11	+0.5
3,811,312	+		DZA65_RS17700	0.25	+1.4
3,811,312	+		DZA65_RS17700	0.25	+0.7
3,811,312	+		DZA65_RS17700	0.25	+1.2
3,811,312	+		DZA65_RS17700	0.25	-0.9
3,811,312	+		DZA65_RS17700	0.25	+0.3
3,811,312	+		DZA65_RS17700	0.25	+0.8
3,811,312	+		DZA65_RS17700	0.25	+1.8
3,811,312	+		DZA65_RS17700	0.25	+0.7
3,811,312	+		DZA65_RS17700	0.25	+0.7
3,811,312	+		DZA65_RS17700	0.25	+0.4
3,811,313	-		DZA65_RS17700	0.25	-1.1
3,811,313	-		DZA65_RS17700	0.25	+0.7
3,811,313	-		DZA65_RS17700	0.25	+0.2
3,811,313	-		DZA65_RS17700	0.25	+2.1
3,811,313	-		DZA65_RS17700	0.25	+1.2
3,811,321	-		DZA65_RS17700	0.27	+0.4
3,811,376	+		DZA65_RS17700	0.41	+0.2
3,811,376	+		DZA65_RS17700	0.41	+1.0
3,811,376	+		DZA65_RS17700	0.41	+0.5
3,811,377	-		DZA65_RS17700	0.41	+0.6
3,811,377	-		DZA65_RS17700	0.41	-0.5
3,811,377	-		DZA65_RS17700	0.41	-0.7
3,811,377	-		DZA65_RS17700	0.41	-1.2
3,811,382	+		DZA65_RS17700	0.42	+0.3
3,811,382	+		DZA65_RS17700	0.42	+2.1
3,811,382	+		DZA65_RS17700	0.42	+0.2
3,811,382	+		DZA65_RS17700	0.42	+0.1
3,811,382	+		DZA65_RS17700	0.42	+0.2
3,811,382	+		DZA65_RS17700	0.42	-1.5
3,811,382	+		DZA65_RS17700	0.42	-0.5
3,811,383	-		DZA65_RS17700	0.43	+0.2
3,811,383	-		DZA65_RS17700	0.43	+1.5
3,811,383	-		DZA65_RS17700	0.43	+0.2
3,811,383	-		DZA65_RS17700	0.43	+0.6
3,811,383	-		DZA65_RS17700	0.43	+0.6
3,811,383	-		DZA65_RS17700	0.43	+0.2
3,811,456	+				+0.5
3,811,456	+		DZA65_RS17700	0.61	+0.4
3,811,457	-		DZA65_RS17700	0.61	+1.1
3,811,457	-		DZA65_RS17700	0.61	-1.2
3,811,523	+		DZA65_RS17700	0.78	-0.2
3,811,523	+		DZA65_RS17700	0.78	+1.5
3,811,523	+		DZA65_RS17700	0.78	+1.4
3,811,523	+		DZA65_RS17700	0.78	-0.3
3,811,524	-		DZA65_RS17700	0.78	+1.1
3,811,524	-		DZA65_RS17700	0.78	+0.9
3,811,524	-		DZA65_RS17700	0.78	+0.3
3,811,524	-		DZA65_RS17700	0.78	-0.3
3,811,524	-		DZA65_RS17700	0.78	+0.1
3,811,585	+				-0.5
3,811,586	-				+0.9
3,811,612	-				-0.8
3,811,713	+				+0.4
3,811,713	+				+0.3
3,811,713	+				+0.2
3,811,713	+				+0.5
3,811,713	+				+0.9
3,811,713	+				+0.0
3,811,713	+				-0.2
3,811,714	-				+0.1
3,811,714	-				-0.6
3,811,714	-				+0.4
3,811,714	-				-0.1
3,811,714	-				+1.1
3,811,714	-				-1.3
3,811,714	-				+0.5
3,811,714	-				-0.5
3,811,714	-				+0.6
3,811,714	-				+0.0
3,811,714	-				-0.3
3,811,714	-				+0.5
3,811,714	-				+0.1
3,811,714	-				+0.9
3,811,722	-				-0.5
3,811,731	+				-0.3
3,811,761	+				+0.3
3,811,761	+				-2.1
3,811,761	+				+1.5
3,811,762	-				-0.3
3,811,812	+				-0.7
3,811,812	+				-0.8
3,811,812	+				-1.0
3,811,812	+				-0.5
3,811,812	+				-0.2
3,811,812	+				+0.0
3,811,813	-				+0.8
3,811,813	-				+0.0
3,811,813	-				+1.0
3,811,813	-				-1.2
3,811,813	-				+0.3
3,811,813	-				-0.6
3,811,955	+		DZA65_RS17705	0.18	+0.1
3,811,955	+		DZA65_RS17705	0.18	+0.7
3,811,956	-		DZA65_RS17705	0.18	-0.2
3,811,956	-		DZA65_RS17705	0.18	-0.1
3,811,956	-		DZA65_RS17705	0.18	+0.1
3,812,109	+		DZA65_RS17705	0.30	-0.1
3,812,109	+		DZA65_RS17705	0.30	-0.9
3,812,109	+		DZA65_RS17705	0.30	+0.5
3,812,109	+		DZA65_RS17705	0.30	+1.3
3,812,109	+		DZA65_RS17705	0.30	+0.7
3,812,109	+		DZA65_RS17705	0.30	-1.0
3,812,109	+		DZA65_RS17705	0.30	+0.4
3,812,109	+		DZA65_RS17705	0.30	-1.7
3,812,109	+		DZA65_RS17705	0.30	+1.6
3,812,109	+		DZA65_RS17705	0.30	+0.2
3,812,109	+		DZA65_RS17705	0.30	+1.1
3,812,110	-		DZA65_RS17705	0.30	+1.1
3,812,110	-		DZA65_RS17705	0.30	-1.2
3,812,110	-		DZA65_RS17705	0.30	-1.4
3,812,110	-		DZA65_RS17705	0.30	-0.4
3,812,110	-		DZA65_RS17705	0.30	-0.2
3,812,110	-		DZA65_RS17705	0.30	-0.9
3,812,110	-		DZA65_RS17705	0.30	+0.1
3,812,110	-		DZA65_RS17705	0.30	+1.3
3,812,110	-		DZA65_RS17705	0.30	-0.6
3,812,110	-		DZA65_RS17705	0.30	-0.1
3,812,110	-		DZA65_RS17705	0.30	-0.6
3,812,119	+		DZA65_RS17705	0.31	+0.7
3,812,146	+		DZA65_RS17705	0.33	-0.3
3,812,147	-		DZA65_RS17705	0.33	-0.1
3,812,147	-		DZA65_RS17705	0.33	+0.1
3,812,172	+		DZA65_RS17705	0.35	-2.6
3,812,172	+		DZA65_RS17705	0.35	-0.7
3,812,173	-		DZA65_RS17705	0.35	-1.8
3,812,173	-				-1.5
3,812,237	+		DZA65_RS17705	0.40	+2.1
3,812,237	+		DZA65_RS17705	0.40	+0.5
3,812,326	+		DZA65_RS17705	0.47	+0.8
3,812,326	+		DZA65_RS17705	0.47	+0.7
3,812,326	+		DZA65_RS17705	0.47	+1.5
3,812,327	-		DZA65_RS17705	0.47	-0.7
3,812,327	-		DZA65_RS17705	0.47	-0.2
3,812,327	-		DZA65_RS17705	0.47	-0.9
3,812,327	-		DZA65_RS17705	0.47	-1.5
3,812,404	+		DZA65_RS17705	0.53	+0.5
3,812,425	+		DZA65_RS17705	0.55	+0.3
3,812,425	+		DZA65_RS17705	0.55	-1.6
3,812,425	+		DZA65_RS17705	0.55	+0.1
3,812,425	+		DZA65_RS17705	0.55	-0.1
3,812,425	+		DZA65_RS17705	0.55	+0.8
3,812,425	+		DZA65_RS17705	0.55	+0.7
3,812,426	-		DZA65_RS17705	0.55	-1.2
3,812,426	-		DZA65_RS17705	0.55	+1.5
3,812,426	-		DZA65_RS17705	0.55	-0.2
3,812,426	-		DZA65_RS17705	0.55	+1.2
3,812,426	-		DZA65_RS17705	0.55	+0.2
3,812,426	-		DZA65_RS17705	0.55	-0.5
3,812,426	-		DZA65_RS17705	0.55	+0.2
3,812,504	+		DZA65_RS17705	0.61	+0.4
3,812,504	+		DZA65_RS17705	0.61	-1.6
3,812,504	+		DZA65_RS17705	0.61	+0.1
3,812,504	+		DZA65_RS17705	0.61	-0.1
3,812,504	+		DZA65_RS17705	0.61	-1.9
3,812,505	-		DZA65_RS17705	0.61	+0.7
3,812,505	-		DZA65_RS17705	0.61	+0.6
3,812,505	-		DZA65_RS17705	0.61	+0.3
3,812,505	-		DZA65_RS17705	0.61	+0.8
3,812,505	-		DZA65_RS17705	0.61	-0.3
3,812,609	+		DZA65_RS17705	0.69	-0.7
3,812,609	+		DZA65_RS17705	0.69	-0.1