Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS02890

Experiment: M9+glycerol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS02880 and DZA65_RS02885 are separated by 129 nucleotidesDZA65_RS02885 and DZA65_RS02890 are separated by 109 nucleotidesDZA65_RS02890 and DZA65_RS02895 are separated by 175 nucleotidesDZA65_RS02895 and DZA65_RS02900 are separated by 131 nucleotides DZA65_RS02880: DZA65_RS02880 - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 618,057 to 620,534 _RS02880 DZA65_RS02885: DZA65_RS02885 - diacylglycerol kinase, at 620,664 to 621,029 _RS02885 DZA65_RS02890: DZA65_RS02890 - repressor LexA, at 621,139 to 621,750 _RS02890 DZA65_RS02895: DZA65_RS02895 - zinc uptake transcriptional repressor Zur, at 621,926 to 622,435 _RS02895 DZA65_RS02900: DZA65_RS02900 - pirin family protein, at 622,567 to 623,277 _RS02900 Position (kb) 621 622Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 620.593 kb on + strandat 620.593 kb on + strandat 620.625 kb on - strandat 620.659 kb on + strandat 620.659 kb on + strandat 620.659 kb on + strandat 620.659 kb on + strandat 620.660 kb on - strandat 620.691 kb on - strandat 620.920 kb on - strandat 621.040 kb on - strandat 621.040 kb on - strandat 621.097 kb on + strandat 621.098 kb on - strandat 621.098 kb on - strandat 621.099 kb on + strandat 621.099 kb on + strandat 621.099 kb on + strandat 621.099 kb on + strandat 621.099 kb on + strandat 621.100 kb on - strandat 621.101 kb on + strandat 621.101 kb on + strandat 621.101 kb on + strandat 621.101 kb on + strandat 621.748 kb on + strandat 621.748 kb on + strandat 621.748 kb on + strandat 621.748 kb on + strandat 621.748 kb on + strandat 621.748 kb on + strandat 621.748 kb on + strandat 621.749 kb on - strandat 621.749 kb on - strandat 621.749 kb on - strandat 621.761 kb on + strandat 621.761 kb on + strandat 621.762 kb on - strandat 621.793 kb on + strandat 621.890 kb on + strandat 621.890 kb on + strandat 621.890 kb on + strandat 621.890 kb on + strandat 621.890 kb on + strandat 621.891 kb on - strandat 621.903 kb on + strandat 621.961 kb on + strandat 621.961 kb on + strandat 621.961 kb on + strandat 621.962 kb on - strandat 621.962 kb on - strandat 621.962 kb on - strandat 622.033 kb on + strand, within DZA65_RS02895at 622.033 kb on + strand, within DZA65_RS02895at 622.033 kb on + strand, within DZA65_RS02895at 622.034 kb on - strand, within DZA65_RS02895at 622.034 kb on - strandat 622.034 kb on - strandat 622.034 kb on - strand, within DZA65_RS02895at 622.034 kb on - strand, within DZA65_RS02895at 622.074 kb on - strand, within DZA65_RS02895at 622.074 kb on - strand, within DZA65_RS02895at 622.132 kb on + strand, within DZA65_RS02895at 622.132 kb on + strand, within DZA65_RS02895at 622.132 kb on + strand, within DZA65_RS02895at 622.133 kb on - strand, within DZA65_RS02895at 622.133 kb on - strand, within DZA65_RS02895at 622.133 kb on - strandat 622.133 kb on - strand, within DZA65_RS02895at 622.147 kb on + strand, within DZA65_RS02895at 622.147 kb on + strand, within DZA65_RS02895at 622.147 kb on + strand, within DZA65_RS02895at 622.147 kb on + strand, within DZA65_RS02895at 622.147 kb on + strand, within DZA65_RS02895at 622.147 kb on + strand, within DZA65_RS02895at 622.148 kb on - strand, within DZA65_RS02895at 622.153 kb on + strand, within DZA65_RS02895at 622.153 kb on + strand, within DZA65_RS02895at 622.182 kb on + strand, within DZA65_RS02895at 622.182 kb on + strand, within DZA65_RS02895at 622.183 kb on - strand, within DZA65_RS02895at 622.183 kb on - strand, within DZA65_RS02895at 622.183 kb on - strand, within DZA65_RS02895at 622.183 kb on - strand, within DZA65_RS02895at 622.183 kb on - strand, within DZA65_RS02895at 622.186 kb on + strand, within DZA65_RS02895at 622.186 kb on + strand, within DZA65_RS02895at 622.211 kb on - strand, within DZA65_RS02895at 622.302 kb on + strand, within DZA65_RS02895at 622.477 kb on + strandat 622.478 kb on - strandat 622.478 kb on - strandat 622.478 kb on - strandat 622.490 kb on + strandat 622.491 kb on - strandat 622.568 kb on + strandat 622.582 kb on + strandat 622.582 kb on + strandat 622.583 kb on - strandat 622.583 kb on - strandat 622.620 kb on + strandat 622.620 kb on + strandat 622.620 kb on + strandat 622.663 kb on + strand, within DZA65_RS02900at 622.663 kb on + strand, within DZA65_RS02900at 622.663 kb on + strand, within DZA65_RS02900at 622.663 kb on + strand, within DZA65_RS02900at 622.663 kb on + strand, within DZA65_RS02900at 622.664 kb on - strand, within DZA65_RS02900at 622.664 kb on - strand, within DZA65_RS02900at 622.664 kb on - strand, within DZA65_RS02900at 622.666 kb on + strand, within DZA65_RS02900at 622.666 kb on + strand, within DZA65_RS02900at 622.666 kb on + strand, within DZA65_RS02900at 622.666 kb on + strand, within DZA65_RS02900at 622.667 kb on - strand, within DZA65_RS02900at 622.667 kb on - strand, within DZA65_RS02900at 622.667 kb on - strand, within DZA65_RS02900at 622.726 kb on + strand, within DZA65_RS02900at 622.726 kb on + strand, within DZA65_RS02900at 622.726 kb on + strand, within DZA65_RS02900at 622.726 kb on + strand, within DZA65_RS02900at 622.726 kb on + strand, within DZA65_RS02900at 622.726 kb on + strand, within DZA65_RS02900at 622.726 kb on + strand, within DZA65_RS02900at 622.726 kb on + strand, within DZA65_RS02900at 622.727 kb on - strandat 622.727 kb on - strand, within DZA65_RS02900at 622.727 kb on - strand, within DZA65_RS02900at 622.727 kb on - strand, within DZA65_RS02900at 622.727 kb on - strand, within DZA65_RS02900at 622.727 kb on - strand, within DZA65_RS02900at 622.727 kb on - strand, within DZA65_RS02900at 622.727 kb on - strand, within DZA65_RS02900at 622.727 kb on - strand, within DZA65_RS02900at 622.730 kb on + strand, within DZA65_RS02900at 622.730 kb on + strand, within DZA65_RS02900at 622.730 kb on + strand, within DZA65_RS02900at 622.730 kb on + strand, within DZA65_RS02900at 622.730 kb on + strand, within DZA65_RS02900at 622.730 kb on + strand, within DZA65_RS02900at 622.731 kb on - strand, within DZA65_RS02900at 622.731 kb on - strand, within DZA65_RS02900at 622.731 kb on - strand, within DZA65_RS02900

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
remove
620,593 + +0.4
620,593 + -0.7
620,625 - -1.1
620,659 + -0.2
620,659 + +1.9
620,659 + -0.2
620,659 + +0.4
620,660 - +0.6
620,691 - +0.1
620,920 - -0.3
621,040 - -0.8
621,040 - +0.6
621,097 + -0.2
621,098 - +1.1
621,098 - -0.0
621,099 + -0.2
621,099 + -2.2
621,099 + -1.0
621,099 + +1.5
621,099 + -1.3
621,100 - -1.6
621,101 + -0.3
621,101 + +0.2
621,101 + +0.6
621,101 + +0.1
621,748 + -1.4
621,748 + +1.2
621,748 + -1.0
621,748 + +0.2
621,748 + +0.7
621,748 + -0.2
621,748 + -0.4
621,749 - -1.5
621,749 - +0.2
621,749 - +0.2
621,761 + +1.3
621,761 + -0.2
621,762 - -0.4
621,793 + +0.5
621,890 + +0.2
621,890 + +0.5
621,890 + +0.8
621,890 + -1.6
621,890 + -0.4
621,891 - -0.4
621,903 + -0.4
621,961 + -0.4
621,961 + +0.2
621,961 + -2.3
621,962 - +1.2
621,962 - +0.0
621,962 - +1.2
622,033 + DZA65_RS02895 0.21 +2.2
622,033 + DZA65_RS02895 0.21 -0.8
622,033 + DZA65_RS02895 0.21 -1.0
622,034 - DZA65_RS02895 0.21 +1.5
622,034 - -0.4
622,034 - +1.2
622,034 - DZA65_RS02895 0.21 +0.5
622,034 - DZA65_RS02895 0.21 -0.0
622,074 - DZA65_RS02895 0.29 +1.8
622,074 - DZA65_RS02895 0.29 -0.4
622,132 + DZA65_RS02895 0.40 +0.2
622,132 + DZA65_RS02895 0.40 -0.0
622,132 + DZA65_RS02895 0.40 -0.3
622,133 - DZA65_RS02895 0.41 +0.4
622,133 - DZA65_RS02895 0.41 -0.5
622,133 - -1.2
622,133 - DZA65_RS02895 0.41 -0.4
622,147 + DZA65_RS02895 0.43 +2.0
622,147 + DZA65_RS02895 0.43 -0.6
622,147 + DZA65_RS02895 0.43 +0.2
622,147 + DZA65_RS02895 0.43 -1.0
622,147 + DZA65_RS02895 0.43 -0.5
622,147 + DZA65_RS02895 0.43 -0.8
622,148 - DZA65_RS02895 0.44 +0.2
622,153 + DZA65_RS02895 0.45 -0.4
622,153 + DZA65_RS02895 0.45 +0.6
622,182 + DZA65_RS02895 0.50 -0.5
622,182 + DZA65_RS02895 0.50 -0.1
622,183 - DZA65_RS02895 0.50 -0.5
622,183 - DZA65_RS02895 0.50 +1.6
622,183 - DZA65_RS02895 0.50 -0.2
622,183 - DZA65_RS02895 0.50 -0.4
622,183 - DZA65_RS02895 0.50 -0.6
622,186 + DZA65_RS02895 0.51 -0.6
622,186 + DZA65_RS02895 0.51 -0.6
622,211 - DZA65_RS02895 0.56 +0.1
622,302 + DZA65_RS02895 0.74 -0.2
622,477 + +0.7
622,478 - -1.0
622,478 - -0.6
622,478 - -0.6
622,490 + -1.5
622,491 - +0.1
622,568 + -0.6
622,582 + -0.6
622,582 + +0.7
622,583 - -0.4
622,583 - -0.5
622,620 + -0.0
622,620 + +0.3
622,620 + +0.4
622,663 + DZA65_RS02900 0.14 -1.4
622,663 + DZA65_RS02900 0.14 -0.1
622,663 + DZA65_RS02900 0.14 +0.7
622,663 + DZA65_RS02900 0.14 +0.4
622,663 + DZA65_RS02900 0.14 +0.4
622,664 - DZA65_RS02900 0.14 -1.2
622,664 - DZA65_RS02900 0.14 -0.5
622,664 - DZA65_RS02900 0.14 -1.5
622,666 + DZA65_RS02900 0.14 +1.3
622,666 + DZA65_RS02900 0.14 -0.2
622,666 + DZA65_RS02900 0.14 -0.3
622,666 + DZA65_RS02900 0.14 -0.6
622,667 - DZA65_RS02900 0.14 +0.2
622,667 - DZA65_RS02900 0.14 +0.6
622,667 - DZA65_RS02900 0.14 +0.2
622,726 + DZA65_RS02900 0.22 +0.2
622,726 + DZA65_RS02900 0.22 -0.2
622,726 + DZA65_RS02900 0.22 +1.4
622,726 + DZA65_RS02900 0.22 -2.8
622,726 + DZA65_RS02900 0.22 +0.0
622,726 + DZA65_RS02900 0.22 +0.2
622,726 + DZA65_RS02900 0.22 -1.2
622,726 + DZA65_RS02900 0.22 -1.0
622,727 - +1.2
622,727 - DZA65_RS02900 0.23 -0.1
622,727 - DZA65_RS02900 0.23 -0.4
622,727 - DZA65_RS02900 0.23 -0.1
622,727 - DZA65_RS02900 0.23 -0.2
622,727 - DZA65_RS02900 0.23 -0.3
622,727 - DZA65_RS02900 0.23 -0.1
622,727 - DZA65_RS02900 0.23 +0.6
622,727 - DZA65_RS02900 0.23 +0.6
622,730 + DZA65_RS02900 0.23 +0.4
622,730 + DZA65_RS02900 0.23 -1.5
622,730 + DZA65_RS02900 0.23 -1.0
622,730 + DZA65_RS02900 0.23 -0.9
622,730 + DZA65_RS02900 0.23 +1.5
622,730 + DZA65_RS02900 0.23 -0.8
622,731 - DZA65_RS02900 0.23 +0.3
622,731 - DZA65_RS02900 0.23 -1.0
622,731 - DZA65_RS02900 0.23 -1.1

Or see this region's nucleotide sequence