Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01995 and DZA65_RS02000 are separated by 119 nucleotides DZA65_RS02000 and DZA65_RS02005 are separated by 123 nucleotides DZA65_RS02005 and DZA65_RS02010 are separated by 292 nucleotides
DZA65_RS01995: DZA65_RS01995 - DUF29 domain-containing protein, at 438,705 to 439,136
_RS01995
DZA65_RS02000: DZA65_RS02000 - hypothetical protein, at 439,256 to 439,990
_RS02000
DZA65_RS02005: DZA65_RS02005 - GNAT family N-acetyltransferase, at 440,114 to 440,617
_RS02005
DZA65_RS02010: DZA65_RS02010 - GNAT family N-acetyltransferase, at 440,910 to 441,392
_RS02010
Position (kb) 440
441 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 439.139 kb on + strand at 439.139 kb on + strand at 439.140 kb on - strand at 439.140 kb on - strand at 439.140 kb on - strand at 439.140 kb on - strand at 439.144 kb on + strand at 439.145 kb on - strand at 439.206 kb on + strand at 439.211 kb on - strand at 439.221 kb on + strand at 439.239 kb on + strand at 439.240 kb on - strand at 439.382 kb on + strand, within DZA65_RS02000 at 439.486 kb on + strand, within DZA65_RS02000 at 439.486 kb on + strand, within DZA65_RS02000 at 439.522 kb on + strand, within DZA65_RS02000 at 439.523 kb on - strand, within DZA65_RS02000 at 439.525 kb on + strand, within DZA65_RS02000 at 439.526 kb on - strand, within DZA65_RS02000 at 439.534 kb on + strand, within DZA65_RS02000 at 439.534 kb on + strand, within DZA65_RS02000 at 439.535 kb on - strand, within DZA65_RS02000 at 439.554 kb on + strand, within DZA65_RS02000 at 439.555 kb on - strand, within DZA65_RS02000 at 439.555 kb on - strand, within DZA65_RS02000 at 439.555 kb on - strand, within DZA65_RS02000 at 439.559 kb on + strand, within DZA65_RS02000 at 439.559 kb on + strand, within DZA65_RS02000 at 439.560 kb on - strand, within DZA65_RS02000 at 439.560 kb on - strand, within DZA65_RS02000 at 439.560 kb on - strand, within DZA65_RS02000 at 439.897 kb on + strand, within DZA65_RS02000 at 439.909 kb on + strand, within DZA65_RS02000 at 439.917 kb on + strand at 439.918 kb on - strand at 439.923 kb on - strand at 439.923 kb on - strand at 439.976 kb on + strand at 439.977 kb on - strand at 439.992 kb on + strand at 439.993 kb on - strand at 439.993 kb on - strand at 439.997 kb on + strand at 439.997 kb on + strand at 439.997 kb on + strand at 439.997 kb on + strand at 439.997 kb on + strand at 439.997 kb on + strand at 439.998 kb on - strand at 439.998 kb on - strand at 439.998 kb on - strand at 440.020 kb on + strand at 440.020 kb on + strand at 440.029 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.116 kb on - strand at 440.117 kb on + strand at 440.117 kb on + strand at 440.117 kb on + strand at 440.117 kb on + strand at 440.179 kb on + strand, within DZA65_RS02005 at 440.180 kb on - strand, within DZA65_RS02005 at 440.202 kb on + strand, within DZA65_RS02005 at 440.245 kb on - strand, within DZA65_RS02005 at 440.245 kb on - strand, within DZA65_RS02005 at 440.433 kb on + strand, within DZA65_RS02005 at 440.433 kb on + strand, within DZA65_RS02005 at 440.434 kb on - strand, within DZA65_RS02005 at 440.454 kb on + strand, within DZA65_RS02005 at 440.454 kb on + strand, within DZA65_RS02005 at 440.454 kb on + strand, within DZA65_RS02005 at 440.455 kb on - strand at 440.455 kb on - strand, within DZA65_RS02005 at 440.455 kb on - strand, within DZA65_RS02005 at 440.455 kb on - strand, within DZA65_RS02005 at 440.455 kb on - strand, within DZA65_RS02005 at 440.455 kb on - strand, within DZA65_RS02005 at 440.455 kb on - strand, within DZA65_RS02005 at 440.495 kb on - strand, within DZA65_RS02005 at 440.495 kb on - strand, within DZA65_RS02005 at 440.495 kb on - strand, within DZA65_RS02005 at 440.496 kb on + strand, within DZA65_RS02005 at 440.496 kb on + strand, within DZA65_RS02005 at 440.496 kb on + strand, within DZA65_RS02005 at 440.496 kb on + strand, within DZA65_RS02005 at 440.496 kb on + strand, within DZA65_RS02005 at 440.496 kb on + strand, within DZA65_RS02005 at 440.497 kb on - strand, within DZA65_RS02005 at 440.497 kb on - strand, within DZA65_RS02005 at 440.497 kb on - strand, within DZA65_RS02005 at 440.599 kb on + strand at 440.600 kb on - strand at 440.600 kb on - strand at 440.688 kb on + strand at 440.688 kb on + strand at 440.688 kb on + strand at 440.688 kb on + strand at 440.688 kb on + strand at 440.689 kb on - strand at 440.689 kb on - strand at 440.689 kb on - strand at 440.689 kb on - strand at 440.689 kb on - strand at 440.689 kb on - strand at 440.692 kb on + strand at 440.692 kb on + strand at 440.692 kb on + strand at 440.692 kb on + strand at 440.693 kb on - strand at 440.693 kb on - strand at 440.693 kb on - strand at 440.693 kb on - strand at 440.693 kb on - strand at 440.693 kb on - strand at 440.693 kb on - strand at 440.703 kb on - strand at 440.704 kb on + strand at 440.704 kb on + strand at 440.704 kb on + strand at 440.704 kb on + strand at 440.704 kb on + strand at 440.705 kb on - strand at 440.705 kb on - strand at 440.705 kb on - strand at 440.705 kb on - strand at 440.705 kb on - strand at 440.705 kb on - strand at 440.705 kb on - strand at 440.705 kb on - strand at 440.705 kb on - strand at 440.705 kb on - strand at 440.705 kb on - strand at 440.719 kb on - strand at 440.720 kb on + strand at 440.720 kb on + strand at 440.720 kb on + strand at 440.720 kb on + strand at 440.720 kb on + strand at 440.720 kb on + strand at 440.720 kb on + strand at 440.720 kb on + strand at 440.720 kb on + strand at 440.720 kb on + strand at 440.721 kb on - strand at 440.721 kb on - strand at 440.721 kb on - strand at 440.721 kb on - strand at 440.721 kb on - strand at 440.721 kb on - strand at 440.721 kb on - strand at 440.721 kb on - strand at 440.721 kb on - strand at 440.721 kb on - strand at 440.721 kb on - strand at 440.721 kb on - strand at 440.721 kb on - strand at 440.721 kb on - strand at 440.721 kb on - strand at 440.721 kb on - strand at 440.721 kb on - strand at 440.721 kb on - strand at 440.721 kb on - strand at 440.721 kb on - strand at 440.724 kb on + strand at 440.724 kb on + strand at 440.751 kb on + strand at 440.751 kb on + strand at 440.751 kb on + strand at 440.751 kb on + strand at 440.752 kb on - strand at 440.752 kb on - strand at 440.752 kb on - strand at 440.752 kb on - strand at 440.753 kb on + strand at 440.753 kb on + strand at 440.753 kb on + strand at 440.753 kb on + strand at 440.753 kb on + strand at 440.753 kb on + strand at 440.753 kb on + strand at 440.754 kb on - strand at 440.754 kb on - strand at 440.754 kb on - strand at 440.754 kb on - strand at 440.758 kb on + strand at 440.759 kb on - strand at 440.759 kb on - strand at 440.762 kb on + strand at 440.762 kb on + strand at 440.762 kb on + strand at 440.763 kb on - strand at 440.763 kb on - strand at 440.763 kb on - strand at 440.810 kb on - strand at 440.825 kb on - strand at 440.867 kb on + strand at 440.867 kb on + strand at 440.867 kb on + strand at 440.867 kb on + strand at 440.868 kb on - strand at 440.868 kb on - strand at 440.895 kb on - strand at 440.909 kb on + strand at 440.909 kb on + strand at 440.909 kb on + strand at 440.909 kb on + strand at 440.910 kb on - strand at 440.910 kb on - strand at 440.910 kb on - strand at 440.918 kb on + strand at 440.918 kb on + strand at 440.918 kb on + strand at 440.918 kb on + strand at 440.918 kb on + strand at 440.918 kb on + strand at 440.918 kb on + strand at 440.918 kb on + strand at 440.918 kb on + strand at 440.918 kb on + strand at 440.918 kb on + strand at 440.918 kb on + strand at 440.918 kb on + strand at 440.918 kb on + strand at 440.918 kb on + strand at 440.918 kb on + strand at 440.919 kb on - strand at 440.919 kb on - strand at 440.919 kb on - strand at 440.919 kb on - strand at 440.919 kb on - strand at 440.919 kb on - strand at 440.919 kb on - strand at 440.919 kb on - strand at 440.919 kb on - strand at 440.919 kb on - strand at 440.919 kb on - strand at 440.919 kb on - strand at 440.919 kb on - strand at 440.919 kb on - strand at 440.919 kb on - strand at 441.005 kb on + strand, within DZA65_RS02010 at 441.005 kb on + strand, within DZA65_RS02010 at 441.015 kb on - strand, within DZA65_RS02010 at 441.015 kb on - strand, within DZA65_RS02010 at 441.218 kb on + strand, within DZA65_RS02010 at 441.218 kb on + strand, within DZA65_RS02010 at 441.219 kb on - strand, within DZA65_RS02010 at 441.306 kb on + strand, within DZA65_RS02010 at 441.307 kb on - strand, within DZA65_RS02010 at 441.349 kb on - strand at 441.350 kb on + strand at 441.351 kb on - strand at 441.351 kb on - strand at 441.351 kb on - strand at 441.351 kb on - strand at 441.415 kb on + strand at 441.416 kb on - strand at 441.438 kb on + strand at 441.438 kb on + strand at 441.438 kb on + strand at 441.439 kb on - strand at 441.472 kb on + strand at 441.514 kb on + strand at 441.515 kb on - strand at 441.525 kb on + strand at 441.525 kb on + strand at 441.525 kb on + strand at 441.526 kb on - strand at 441.535 kb on + strand at 441.538 kb on + strand at 441.539 kb on - strand at 441.543 kb on + strand at 441.543 kb on + strand at 441.544 kb on - strand at 441.544 kb on - strand at 441.545 kb on + strand at 441.575 kb on + strand at 441.575 kb on + strand at 441.576 kb on - strand at 441.576 kb on - strand at 441.576 kb on - strand at 441.576 kb on - strand at 441.580 kb on - strand at 441.608 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 439,139 + -0.4 439,139 + -1.0 439,140 - +1.7 439,140 - -0.0 439,140 - +0.4 439,140 - +0.3 439,144 + -0.4 439,145 - -0.2 439,206 + -0.2 439,211 - -0.9 439,221 + -0.6 439,239 + +0.4 439,240 - +1.4 439,382 + DZA65_RS02000 0.17 +0.0 439,486 + DZA65_RS02000 0.31 +0.5 439,486 + DZA65_RS02000 0.31 -0.3 439,522 + DZA65_RS02000 0.36 -0.4 439,523 - DZA65_RS02000 0.36 -0.1 439,525 + DZA65_RS02000 0.37 -0.0 439,526 - DZA65_RS02000 0.37 +1.0 439,534 + DZA65_RS02000 0.38 +1.0 439,534 + DZA65_RS02000 0.38 -1.0 439,535 - DZA65_RS02000 0.38 -0.5 439,554 + DZA65_RS02000 0.41 +1.2 439,555 - DZA65_RS02000 0.41 +0.3 439,555 - DZA65_RS02000 0.41 -0.2 439,555 - DZA65_RS02000 0.41 -0.2 439,559 + DZA65_RS02000 0.41 +0.6 439,559 + DZA65_RS02000 0.41 +0.4 439,560 - DZA65_RS02000 0.41 -1.0 439,560 - DZA65_RS02000 0.41 +0.7 439,560 - DZA65_RS02000 0.41 +0.9 439,897 + DZA65_RS02000 0.87 -1.2 439,909 + DZA65_RS02000 0.89 -1.2 439,917 + -1.2 439,918 - +0.0 439,923 - +0.9 439,923 - +0.5 439,976 + +1.4 439,977 - -0.1 439,992 + +0.3 439,993 - -0.3 439,993 - -0.3 439,997 + +0.5 439,997 + +1.2 439,997 + +0.7 439,997 + +0.4 439,997 + +0.0 439,997 + -1.1 439,998 - +0.6 439,998 - -0.8 439,998 - +0.5 440,020 + -0.8 440,020 + -2.3 440,029 + +1.6 440,115 + +0.3 440,115 + -2.8 440,115 + +0.2 440,115 + +0.7 440,115 + +0.0 440,115 + +0.2 440,115 + -0.1 440,115 + -0.1 440,115 + +1.2 440,116 - -0.5 440,117 + +1.4 440,117 + +0.8 440,117 + -0.0 440,117 + -0.9 440,179 + DZA65_RS02005 0.13 -0.9 440,180 - DZA65_RS02005 0.13 -1.3 440,202 + DZA65_RS02005 0.17 +0.8 440,245 - DZA65_RS02005 0.26 -0.8 440,245 - DZA65_RS02005 0.26 -1.2 440,433 + DZA65_RS02005 0.63 +0.4 440,433 + DZA65_RS02005 0.63 +0.2 440,434 - DZA65_RS02005 0.63 -0.6 440,454 + DZA65_RS02005 0.67 -0.8 440,454 + DZA65_RS02005 0.67 -0.6 440,454 + DZA65_RS02005 0.67 -0.5 440,455 - -0.6 440,455 - DZA65_RS02005 0.68 +0.6 440,455 - DZA65_RS02005 0.68 +0.4 440,455 - DZA65_RS02005 0.68 +0.2 440,455 - DZA65_RS02005 0.68 -1.1 440,455 - DZA65_RS02005 0.68 +0.1 440,455 - DZA65_RS02005 0.68 -0.6 440,495 - DZA65_RS02005 0.76 -0.3 440,495 - DZA65_RS02005 0.76 -0.6 440,495 - DZA65_RS02005 0.76 -0.6 440,496 + DZA65_RS02005 0.76 +0.7 440,496 + DZA65_RS02005 0.76 -0.7 440,496 + DZA65_RS02005 0.76 -0.3 440,496 + DZA65_RS02005 0.76 -1.6 440,496 + DZA65_RS02005 0.76 -0.2 440,496 + DZA65_RS02005 0.76 -1.0 440,497 - DZA65_RS02005 0.76 +0.3 440,497 - DZA65_RS02005 0.76 +1.7 440,497 - DZA65_RS02005 0.76 -0.3 440,599 + +1.2 440,600 - -0.0 440,600 - -1.6 440,688 + +0.9 440,688 + +1.9 440,688 + -0.8 440,688 + +0.8 440,688 + +0.4 440,689 - -0.3 440,689 - -1.7 440,689 - +1.2 440,689 - +0.1 440,689 - -0.2 440,689 - +0.2 440,692 + -1.5 440,692 + +0.4 440,692 + +0.5 440,692 + +0.1 440,693 - +0.1 440,693 - +1.0 440,693 - -0.6 440,693 - -1.3 440,693 - +1.2 440,693 - +0.2 440,693 - +1.6 440,703 - -0.1 440,704 + -0.1 440,704 + +0.8 440,704 + -0.5 440,704 + -0.5 440,704 + +1.0 440,705 - +0.8 440,705 - -0.8 440,705 - +0.2 440,705 - -0.2 440,705 - +1.0 440,705 - -0.3 440,705 - -0.1 440,705 - -0.2 440,705 - +0.5 440,705 - -0.3 440,705 - -0.7 440,719 - +1.2 440,720 + +0.4 440,720 + +0.8 440,720 + -0.3 440,720 + -0.2 440,720 + -0.3 440,720 + -0.5 440,720 + +0.9 440,720 + -0.0 440,720 + -0.3 440,720 + +0.5 440,721 - +1.7 440,721 - -0.6 440,721 - -0.0 440,721 - -0.0 440,721 - -1.1 440,721 - -0.2 440,721 - +0.2 440,721 - -0.8 440,721 - +0.4 440,721 - -0.0 440,721 - -0.4 440,721 - -0.3 440,721 - -0.9 440,721 - +0.5 440,721 - -0.6 440,721 - -0.2 440,721 - +0.2 440,721 - -0.5 440,721 - -0.6 440,721 - -1.0 440,724 + +0.6 440,724 + -0.5 440,751 + -0.0 440,751 + -0.3 440,751 + +0.2 440,751 + -0.8 440,752 - -1.6 440,752 - -0.3 440,752 - -0.0 440,752 - +1.4 440,753 + -0.3 440,753 + -0.2 440,753 + -0.1 440,753 + -0.3 440,753 + +0.7 440,753 + +0.4 440,753 + -1.1 440,754 - -0.1 440,754 - +0.6 440,754 - +0.6 440,754 - -1.2 440,758 + +0.0 440,759 - -0.6 440,759 - +0.7 440,762 + +0.2 440,762 + -0.1 440,762 + +0.1 440,763 - +0.5 440,763 - -0.5 440,763 - -0.9 440,810 - +0.8 440,825 - +0.2 440,867 + -1.9 440,867 + +0.2 440,867 + -0.5 440,867 + -0.2 440,868 - +0.2 440,868 - -0.2 440,895 - +1.2 440,909 + -0.2 440,909 + +1.5 440,909 + +1.7 440,909 + +0.2 440,910 - +0.8 440,910 - +1.0 440,910 - -0.4 440,918 + +0.3 440,918 + -0.3 440,918 + -1.4 440,918 + -0.6 440,918 + +1.5 440,918 + +0.7 440,918 + +0.3 440,918 + +0.5 440,918 + -0.4 440,918 + +0.4 440,918 + -0.6 440,918 + -0.1 440,918 + +1.0 440,918 + +0.3 440,918 + -0.7 440,918 + +0.2 440,919 - +0.0 440,919 - -1.5 440,919 - -0.3 440,919 - +0.9 440,919 - +1.2 440,919 - -0.6 440,919 - +0.7 440,919 - +0.7 440,919 - +0.1 440,919 - +0.2 440,919 - +1.5 440,919 - +0.2 440,919 - +1.8 440,919 - -0.6 440,919 - +1.2 441,005 + DZA65_RS02010 0.20 +0.8 441,005 + DZA65_RS02010 0.20 +0.0 441,015 - DZA65_RS02010 0.22 -0.5 441,015 - DZA65_RS02010 0.22 -2.3 441,218 + DZA65_RS02010 0.64 -0.3 441,218 + DZA65_RS02010 0.64 -1.4 441,219 - DZA65_RS02010 0.64 -0.8 441,306 + DZA65_RS02010 0.82 -0.4 441,307 - DZA65_RS02010 0.82 +0.9 441,349 - -0.2 441,350 + +0.0 441,351 - +0.7 441,351 - -0.6 441,351 - -0.2 441,351 - +1.2 441,415 + -3.0 441,416 - +0.1 441,438 + -2.2 441,438 + +0.4 441,438 + +0.3 441,439 - +0.5 441,472 + -1.1 441,514 + +0.7 441,515 - +0.1 441,525 + +0.8 441,525 + +0.5 441,525 + +0.2 441,526 - -1.6 441,535 + +0.7 441,538 + +0.8 441,539 - +1.2 441,543 + +0.4 441,543 + +0.1 441,544 - +0.8 441,544 - -0.2 441,545 + +0.5 441,575 + +1.0 441,575 + +2.8 441,576 - +1.6 441,576 - -0.1 441,576 - -0.6 441,576 - +0.1 441,580 - +1.9 441,608 + +0.7
Or see this region's nucleotide sequence