Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21715

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS21710 and DZA65_RS21715 are separated by 64 nucleotidesDZA65_RS21715 and DZA65_RS21720 are separated by 34 nucleotides DZA65_RS21710: DZA65_RS21710 - MFS transporter, at 4,696,837 to 4,697,316 _RS21710 DZA65_RS21715: DZA65_RS21715 - L(+)-tartrate dehydratase subunit beta, at 4,697,381 to 4,697,581 _RS21715 DZA65_RS21720: DZA65_RS21720 - PLP-dependent aminotransferase family protein, at 4,697,616 to 4,698,800 _RS21720 Position (kb) 4697 4698Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4696.417 kb on - strandat 4696.424 kb on + strandat 4696.424 kb on + strandat 4696.424 kb on + strandat 4696.424 kb on + strandat 4696.424 kb on + strandat 4696.425 kb on - strandat 4696.425 kb on - strandat 4696.469 kb on + strandat 4696.512 kb on - strandat 4696.595 kb on + strandat 4696.595 kb on + strandat 4696.641 kb on - strandat 4696.701 kb on - strandat 4696.707 kb on + strandat 4696.713 kb on + strandat 4696.713 kb on + strandat 4696.714 kb on - strandat 4696.715 kb on + strandat 4696.715 kb on + strandat 4696.754 kb on - strandat 4696.766 kb on + strandat 4696.772 kb on + strandat 4696.822 kb on - strandat 4696.905 kb on + strand, within DZA65_RS21710at 4696.905 kb on + strand, within DZA65_RS21710at 4696.906 kb on - strand, within DZA65_RS21710at 4696.936 kb on - strand, within DZA65_RS21710at 4696.991 kb on + strand, within DZA65_RS21710at 4696.991 kb on + strand, within DZA65_RS21710at 4696.992 kb on - strand, within DZA65_RS21710at 4696.992 kb on - strand, within DZA65_RS21710at 4697.052 kb on + strand, within DZA65_RS21710at 4697.055 kb on + strand, within DZA65_RS21710at 4697.055 kb on + strand, within DZA65_RS21710at 4697.056 kb on - strand, within DZA65_RS21710at 4697.056 kb on - strand, within DZA65_RS21710at 4697.056 kb on - strand, within DZA65_RS21710at 4697.056 kb on - strand, within DZA65_RS21710at 4697.097 kb on + strand, within DZA65_RS21710at 4697.097 kb on + strand, within DZA65_RS21710at 4697.098 kb on - strand, within DZA65_RS21710at 4697.098 kb on - strand, within DZA65_RS21710at 4697.158 kb on + strand, within DZA65_RS21710at 4697.159 kb on - strand, within DZA65_RS21710at 4697.311 kb on + strandat 4697.311 kb on + strandat 4697.311 kb on + strandat 4697.311 kb on + strandat 4697.311 kb on + strandat 4697.312 kb on - strandat 4697.440 kb on + strand, within DZA65_RS21715at 4697.496 kb on + strand, within DZA65_RS21715at 4697.605 kb on + strandat 4697.606 kb on - strandat 4697.606 kb on - strandat 4697.606 kb on - strandat 4697.617 kb on + strandat 4697.617 kb on + strandat 4697.617 kb on + strandat 4697.618 kb on - strandat 4697.618 kb on - strandat 4697.840 kb on + strand, within DZA65_RS21720at 4697.840 kb on + strand, within DZA65_RS21720at 4697.840 kb on + strand, within DZA65_RS21720at 4697.840 kb on + strand, within DZA65_RS21720at 4697.840 kb on + strand, within DZA65_RS21720at 4697.841 kb on - strand, within DZA65_RS21720at 4697.841 kb on - strand, within DZA65_RS21720at 4697.841 kb on - strand, within DZA65_RS21720at 4697.841 kb on - strand, within DZA65_RS21720at 4697.841 kb on - strand, within DZA65_RS21720at 4697.841 kb on - strand, within DZA65_RS21720at 4697.899 kb on + strand, within DZA65_RS21720at 4697.900 kb on - strand, within DZA65_RS21720at 4697.950 kb on + strand, within DZA65_RS21720at 4697.950 kb on + strand, within DZA65_RS21720at 4697.950 kb on + strand, within DZA65_RS21720at 4697.950 kb on + strand, within DZA65_RS21720at 4697.951 kb on - strand, within DZA65_RS21720at 4697.951 kb on - strand, within DZA65_RS21720at 4697.951 kb on - strand, within DZA65_RS21720at 4697.951 kb on - strand, within DZA65_RS21720at 4697.951 kb on - strand, within DZA65_RS21720at 4697.953 kb on + strand, within DZA65_RS21720at 4697.953 kb on + strand, within DZA65_RS21720at 4697.953 kb on + strand, within DZA65_RS21720at 4697.953 kb on + strand, within DZA65_RS21720at 4697.953 kb on + strand, within DZA65_RS21720at 4697.953 kb on + strand, within DZA65_RS21720at 4697.954 kb on - strand, within DZA65_RS21720at 4697.954 kb on - strand, within DZA65_RS21720at 4697.954 kb on - strand, within DZA65_RS21720at 4697.954 kb on - strand, within DZA65_RS21720at 4697.954 kb on - strand, within DZA65_RS21720at 4697.954 kb on - strand, within DZA65_RS21720at 4697.954 kb on - strand, within DZA65_RS21720at 4697.954 kb on - strand, within DZA65_RS21720at 4697.964 kb on - strand, within DZA65_RS21720at 4697.964 kb on - strand, within DZA65_RS21720at 4698.020 kb on + strand, within DZA65_RS21720at 4698.020 kb on + strand, within DZA65_RS21720at 4698.020 kb on + strand, within DZA65_RS21720at 4698.020 kb on + strand, within DZA65_RS21720at 4698.020 kb on + strand, within DZA65_RS21720at 4698.095 kb on + strand, within DZA65_RS21720at 4698.095 kb on + strand, within DZA65_RS21720at 4698.095 kb on + strand, within DZA65_RS21720at 4698.095 kb on + strand, within DZA65_RS21720at 4698.095 kb on + strand, within DZA65_RS21720at 4698.096 kb on - strand, within DZA65_RS21720at 4698.096 kb on - strand, within DZA65_RS21720at 4698.096 kb on - strand, within DZA65_RS21720at 4698.096 kb on - strand, within DZA65_RS21720at 4698.096 kb on - strand, within DZA65_RS21720at 4698.096 kb on - strand, within DZA65_RS21720at 4698.096 kb on - strand, within DZA65_RS21720at 4698.096 kb on - strand, within DZA65_RS21720at 4698.096 kb on - strand, within DZA65_RS21720at 4698.097 kb on + strand, within DZA65_RS21720at 4698.097 kb on + strand, within DZA65_RS21720at 4698.097 kb on + strand, within DZA65_RS21720at 4698.097 kb on + strand, within DZA65_RS21720at 4698.097 kb on + strand, within DZA65_RS21720at 4698.097 kb on + strand, within DZA65_RS21720at 4698.098 kb on - strand, within DZA65_RS21720at 4698.098 kb on - strand, within DZA65_RS21720at 4698.098 kb on - strand, within DZA65_RS21720at 4698.098 kb on - strand, within DZA65_RS21720at 4698.139 kb on + strand, within DZA65_RS21720at 4698.195 kb on + strand, within DZA65_RS21720at 4698.195 kb on + strand, within DZA65_RS21720at 4698.196 kb on - strand, within DZA65_RS21720at 4698.196 kb on - strand, within DZA65_RS21720at 4698.196 kb on - strandat 4698.196 kb on - strand, within DZA65_RS21720at 4698.196 kb on - strand, within DZA65_RS21720at 4698.196 kb on - strand, within DZA65_RS21720at 4698.295 kb on + strand, within DZA65_RS21720at 4698.296 kb on - strand, within DZA65_RS21720at 4698.296 kb on - strand, within DZA65_RS21720at 4698.296 kb on - strand, within DZA65_RS21720at 4698.421 kb on + strand, within DZA65_RS21720at 4698.421 kb on + strand, within DZA65_RS21720at 4698.422 kb on - strand, within DZA65_RS21720at 4698.422 kb on - strand, within DZA65_RS21720at 4698.422 kb on - strand, within DZA65_RS21720at 4698.422 kb on - strand, within DZA65_RS21720at 4698.422 kb on - strand, within DZA65_RS21720at 4698.446 kb on + strand, within DZA65_RS21720at 4698.447 kb on - strand, within DZA65_RS21720at 4698.447 kb on - strand, within DZA65_RS21720at 4698.515 kb on + strand, within DZA65_RS21720at 4698.515 kb on + strand, within DZA65_RS21720at 4698.515 kb on + strand, within DZA65_RS21720at 4698.516 kb on - strand, within DZA65_RS21720at 4698.516 kb on - strand, within DZA65_RS21720

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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4,696,417 - -1.9
4,696,424 + -0.1
4,696,424 + -0.1
4,696,424 + +0.4
4,696,424 + -0.5
4,696,424 + -0.1
4,696,425 - -0.4
4,696,425 - -0.5
4,696,469 + -1.8
4,696,512 - -0.2
4,696,595 + +1.4
4,696,595 + -0.4
4,696,641 - -1.1
4,696,701 - -1.4
4,696,707 + -0.6
4,696,713 + -0.4
4,696,713 + +0.1
4,696,714 - -0.2
4,696,715 + +0.1
4,696,715 + -1.2
4,696,754 - +2.1
4,696,766 + -0.1
4,696,772 + +1.4
4,696,822 - +0.2
4,696,905 + DZA65_RS21710 0.14 -0.3
4,696,905 + DZA65_RS21710 0.14 +0.5
4,696,906 - DZA65_RS21710 0.14 -0.2
4,696,936 - DZA65_RS21710 0.21 +0.2
4,696,991 + DZA65_RS21710 0.32 -0.9
4,696,991 + DZA65_RS21710 0.32 -1.6
4,696,992 - DZA65_RS21710 0.32 +1.1
4,696,992 - DZA65_RS21710 0.32 +0.2
4,697,052 + DZA65_RS21710 0.45 +0.2
4,697,055 + DZA65_RS21710 0.45 -0.1
4,697,055 + DZA65_RS21710 0.45 -0.4
4,697,056 - DZA65_RS21710 0.46 -0.0
4,697,056 - DZA65_RS21710 0.46 -0.5
4,697,056 - DZA65_RS21710 0.46 -1.1
4,697,056 - DZA65_RS21710 0.46 +0.8
4,697,097 + DZA65_RS21710 0.54 -0.6
4,697,097 + DZA65_RS21710 0.54 +1.4
4,697,098 - DZA65_RS21710 0.54 -1.8
4,697,098 - DZA65_RS21710 0.54 -1.2
4,697,158 + DZA65_RS21710 0.67 +0.1
4,697,159 - DZA65_RS21710 0.67 -0.4
4,697,311 + +0.4
4,697,311 + +0.0
4,697,311 + +0.8
4,697,311 + -3.3
4,697,311 + -1.3
4,697,312 - -0.2
4,697,440 + DZA65_RS21715 0.29 +1.1
4,697,496 + DZA65_RS21715 0.57 -0.2
4,697,605 + +0.7
4,697,606 - -0.4
4,697,606 - -0.2
4,697,606 - +2.0
4,697,617 + +0.6
4,697,617 + +0.5
4,697,617 + +0.0
4,697,618 - -0.1
4,697,618 - -0.2
4,697,840 + DZA65_RS21720 0.19 +0.8
4,697,840 + DZA65_RS21720 0.19 -0.1
4,697,840 + DZA65_RS21720 0.19 +0.2
4,697,840 + DZA65_RS21720 0.19 -0.2
4,697,840 + DZA65_RS21720 0.19 +1.4
4,697,841 - DZA65_RS21720 0.19 -0.1
4,697,841 - DZA65_RS21720 0.19 +0.1
4,697,841 - DZA65_RS21720 0.19 +0.4
4,697,841 - DZA65_RS21720 0.19 -0.3
4,697,841 - DZA65_RS21720 0.19 -1.2
4,697,841 - DZA65_RS21720 0.19 -0.0
4,697,899 + DZA65_RS21720 0.24 -0.1
4,697,900 - DZA65_RS21720 0.24 -0.4
4,697,950 + DZA65_RS21720 0.28 -0.3
4,697,950 + DZA65_RS21720 0.28 -0.1
4,697,950 + DZA65_RS21720 0.28 +0.4
4,697,950 + DZA65_RS21720 0.28 -0.2
4,697,951 - DZA65_RS21720 0.28 +0.2
4,697,951 - DZA65_RS21720 0.28 +0.6
4,697,951 - DZA65_RS21720 0.28 -0.4
4,697,951 - DZA65_RS21720 0.28 +0.2
4,697,951 - DZA65_RS21720 0.28 -0.8
4,697,953 + DZA65_RS21720 0.28 -1.3
4,697,953 + DZA65_RS21720 0.28 -0.3
4,697,953 + DZA65_RS21720 0.28 +0.2
4,697,953 + DZA65_RS21720 0.28 -0.3
4,697,953 + DZA65_RS21720 0.28 +0.7
4,697,953 + DZA65_RS21720 0.28 +0.6
4,697,954 - DZA65_RS21720 0.29 +0.2
4,697,954 - DZA65_RS21720 0.29 +0.2
4,697,954 - DZA65_RS21720 0.29 +1.9
4,697,954 - DZA65_RS21720 0.29 -0.4
4,697,954 - DZA65_RS21720 0.29 +0.6
4,697,954 - DZA65_RS21720 0.29 +0.5
4,697,954 - DZA65_RS21720 0.29 -0.4
4,697,954 - DZA65_RS21720 0.29 +1.8
4,697,964 - DZA65_RS21720 0.29 +1.2
4,697,964 - DZA65_RS21720 0.29 -0.9
4,698,020 + DZA65_RS21720 0.34 -0.3
4,698,020 + DZA65_RS21720 0.34 +0.1
4,698,020 + DZA65_RS21720 0.34 -0.6
4,698,020 + DZA65_RS21720 0.34 +1.2
4,698,020 + DZA65_RS21720 0.34 +1.0
4,698,095 + DZA65_RS21720 0.40 -0.4
4,698,095 + DZA65_RS21720 0.40 +0.3
4,698,095 + DZA65_RS21720 0.40 -0.5
4,698,095 + DZA65_RS21720 0.40 -1.3
4,698,095 + DZA65_RS21720 0.40 -2.2
4,698,096 - DZA65_RS21720 0.41 +0.9
4,698,096 - DZA65_RS21720 0.41 +0.2
4,698,096 - DZA65_RS21720 0.41 +0.2
4,698,096 - DZA65_RS21720 0.41 -1.6
4,698,096 - DZA65_RS21720 0.41 -0.8
4,698,096 - DZA65_RS21720 0.41 +1.4
4,698,096 - DZA65_RS21720 0.41 +0.4
4,698,096 - DZA65_RS21720 0.41 +0.4
4,698,096 - DZA65_RS21720 0.41 +1.0
4,698,097 + DZA65_RS21720 0.41 +1.0
4,698,097 + DZA65_RS21720 0.41 -3.0
4,698,097 + DZA65_RS21720 0.41 +0.4
4,698,097 + DZA65_RS21720 0.41 +0.1
4,698,097 + DZA65_RS21720 0.41 -0.2
4,698,097 + DZA65_RS21720 0.41 +1.9
4,698,098 - DZA65_RS21720 0.41 -0.1
4,698,098 - DZA65_RS21720 0.41 +1.1
4,698,098 - DZA65_RS21720 0.41 -1.6
4,698,098 - DZA65_RS21720 0.41 -2.9
4,698,139 + DZA65_RS21720 0.44 -1.2
4,698,195 + DZA65_RS21720 0.49 -0.5
4,698,195 + DZA65_RS21720 0.49 -0.5
4,698,196 - DZA65_RS21720 0.49 +0.1
4,698,196 - DZA65_RS21720 0.49 -1.1
4,698,196 - -0.9
4,698,196 - DZA65_RS21720 0.49 +0.2
4,698,196 - DZA65_RS21720 0.49 +0.7
4,698,196 - DZA65_RS21720 0.49 -0.8
4,698,295 + DZA65_RS21720 0.57 -0.7
4,698,296 - DZA65_RS21720 0.57 -1.2
4,698,296 - DZA65_RS21720 0.57 -0.1
4,698,296 - DZA65_RS21720 0.57 -0.2
4,698,421 + DZA65_RS21720 0.68 -1.2
4,698,421 + DZA65_RS21720 0.68 +1.2
4,698,422 - DZA65_RS21720 0.68 -0.2
4,698,422 - DZA65_RS21720 0.68 -1.8
4,698,422 - DZA65_RS21720 0.68 -0.2
4,698,422 - DZA65_RS21720 0.68 -0.3
4,698,422 - DZA65_RS21720 0.68 -0.2
4,698,446 + DZA65_RS21720 0.70 -0.6
4,698,447 - DZA65_RS21720 0.70 +1.0
4,698,447 - DZA65_RS21720 0.70 -0.6
4,698,515 + DZA65_RS21720 0.76 +0.1
4,698,515 + DZA65_RS21720 0.76 +0.4
4,698,515 + DZA65_RS21720 0.76 -0.9
4,698,516 - DZA65_RS21720 0.76 -0.4
4,698,516 - DZA65_RS21720 0.76 -0.2

Or see this region's nucleotide sequence