Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20220

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,378,494	+		DZA65_RS20210	0.81	+0.5
4,378,687	+				-0.4
4,378,691	+				-0.5
4,378,691	+				-0.0
4,378,691	+				+1.0
4,378,691	+				-1.2
4,378,691	+				+0.2
4,378,691	+				+1.6
4,378,691	+				-0.7
4,378,692	-				+0.0
4,378,692	-				+1.8
4,378,751	+				+1.1
4,378,751	+				+1.0
4,378,751	+				+0.4
4,378,751	+				+0.7
4,378,751	+				-0.3
4,378,751	+				-0.4
4,378,751	+				-0.1
4,378,751	+				+1.0
4,378,752	-				-0.7
4,378,752	-				+0.2
4,378,752	-				-0.3
4,378,752	-				-0.3
4,378,752	-				+0.4
4,378,752	-				-0.0
4,378,752	-				-0.7
4,378,752	-				-0.7
4,378,752	-				+0.2
4,378,752	-				+0.9
4,378,752	-				-0.1
4,378,753	+				-2.2
4,378,753	+				+1.0
4,378,753	+				-0.3
4,378,753	+				-1.3
4,378,753	+				-0.9
4,378,753	+				+0.0
4,378,753	+				+0.1
4,378,753	+				+0.4
4,378,754	-				-1.5
4,378,754	-				+0.8
4,378,754	-				-0.4
4,378,754	-				+0.2
4,378,798	-		DZA65_RS20215	0.17	+1.5
4,378,798	-		DZA65_RS20215	0.17	-1.4
4,378,833	+		DZA65_RS20215	0.27	-0.2
4,378,833	+		DZA65_RS20215	0.27	-2.2
4,378,833	+		DZA65_RS20215	0.27	+0.2
4,378,833	+		DZA65_RS20215	0.27	+0.9
4,378,833	+		DZA65_RS20215	0.27	+1.3
4,378,833	+		DZA65_RS20215	0.27	-0.0
4,378,833	+		DZA65_RS20215	0.27	-0.0
4,378,833	+		DZA65_RS20215	0.27	-0.8
4,378,834	-		DZA65_RS20215	0.27	-0.9
4,378,834	-		DZA65_RS20215	0.27	+0.2
4,378,834	-		DZA65_RS20215	0.27	+0.3
4,378,834	-		DZA65_RS20215	0.27	-1.0
4,378,834	-		DZA65_RS20215	0.27	+0.4
4,378,834	-		DZA65_RS20215	0.27	-1.9
4,378,834	-		DZA65_RS20215	0.27	+1.3
4,378,976	+		DZA65_RS20215	0.68	+0.5
4,378,976	+		DZA65_RS20215	0.68	-0.0
4,378,977	-		DZA65_RS20215	0.69	-0.8
4,378,985	+		DZA65_RS20215	0.71	+0.8
4,378,986	-		DZA65_RS20215	0.71	-2.1
4,379,021	+		DZA65_RS20215	0.81	+0.0
4,379,027	+		DZA65_RS20215	0.83	+0.3
4,379,027	+		DZA65_RS20215	0.83	-0.5
4,379,070	+				+0.2
4,379,071	-				+0.1
4,379,071	-				+2.4
4,379,072	+				+0.9
4,379,072	+				+0.8
4,379,072	+				+0.7
4,379,072	+				+0.3
4,379,072	+				-1.3
4,379,072	+				-1.1
4,379,072	+				+1.3
4,379,072	+				+0.3
4,379,072	+				+1.1
4,379,072	+				-0.3
4,379,073	-				-0.5
4,379,073	-				+0.9
4,379,073	-				+0.1
4,379,073	-				-0.3
4,379,073	-				-0.0
4,379,100	-				-0.5
4,379,106	+				+0.3
4,379,106	+				-0.5
4,379,107	-				-1.5
4,379,107	-				+0.7
4,379,151	+				-0.5
4,379,151	+				+0.7
4,379,152	-				-1.2
4,379,173	-				-0.2
4,379,211	+				-0.6
4,379,211	+				+0.2
4,379,211	+				+0.6
4,379,211	+				+0.7
4,379,211	+				+1.1
4,379,211	+				+0.1
4,379,211	+				-1.0
4,379,211	+				-0.2
4,379,211	+				+0.9
4,379,211	+				-1.9
4,379,211	+				+0.8
4,379,211	+				+0.4
4,379,211	+				+0.3
4,379,211	+				+0.7
4,379,212	-				+1.1
4,379,212	-				+0.3
4,379,212	-				+1.0
4,379,212	-				-0.2
4,379,212	-				-0.5
4,379,212	-				-1.7
4,379,212	-				+0.1
4,379,212	-				+0.9
4,379,212	-				+0.4
4,379,212	-				+0.9
4,379,212	-				-0.3
4,379,212	-				-1.0
4,379,212	-				+0.7
4,379,212	-				+1.4
4,379,283	+				-1.5
4,379,283	+				+1.3
4,379,283	+				+0.0
4,379,286	+				+0.3
4,379,286	+				-0.1
4,379,286	+				+1.3
4,379,286	+				-0.5
4,379,286	+				+0.0
4,379,286	+				-1.2
4,379,286	+				+1.1
4,379,286	+				-1.5
4,379,286	+				-0.2
4,379,287	-				-1.9
4,379,287	-				+0.2
4,379,287	-				-0.3
4,379,287	-				-0.7
4,379,305	+				-0.1
4,379,345	+				-1.1
4,379,346	-				+0.5
4,379,346	-				-1.1
4,379,546	+		DZA65_RS20220	0.15	-2.3
4,379,569	-		DZA65_RS20220	0.16	-0.5
4,379,569	-		DZA65_RS20220	0.16	-1.9
4,379,569	-		DZA65_RS20220	0.16	-0.1
4,379,788	+		DZA65_RS20220	0.29	+0.5
4,379,788	+		DZA65_RS20220	0.29	-0.9
4,379,789	-		DZA65_RS20220	0.29	-1.9
4,379,845	+		DZA65_RS20220	0.33	-1.4
4,379,875	+		DZA65_RS20220	0.35	+0.8
4,379,875	+		DZA65_RS20220	0.35	-1.0
4,379,876	-		DZA65_RS20220	0.35	-0.2
4,379,876	-		DZA65_RS20220	0.35	-0.8
4,379,876	-		DZA65_RS20220	0.35	+0.5
4,379,876	-		DZA65_RS20220	0.35	-2.1
4,379,930	+		DZA65_RS20220	0.38	+0.3
4,379,930	+		DZA65_RS20220	0.38	-1.9
4,379,930	+		DZA65_RS20220	0.38	-1.3
4,379,930	+		DZA65_RS20220	0.38	-0.2
4,379,930	+		DZA65_RS20220	0.38	+0.3
4,379,930	+		DZA65_RS20220	0.38	-0.1
4,379,930	+		DZA65_RS20220	0.38	-2.4
4,379,930	+		DZA65_RS20220	0.38	-0.6
4,379,930	+		DZA65_RS20220	0.38	-0.5
4,379,930	+		DZA65_RS20220	0.38	-0.7
4,379,930	+		DZA65_RS20220	0.38	-1.1
4,379,930	+		DZA65_RS20220	0.38	-3.0
4,379,930	+		DZA65_RS20220	0.38	-2.2
4,379,930	+		DZA65_RS20220	0.38	-1.3
4,379,930	+		DZA65_RS20220	0.38	-1.3
4,379,930	+		DZA65_RS20220	0.38	-0.9
4,379,930	+		DZA65_RS20220	0.38	-0.6
4,379,930	+		DZA65_RS20220	0.38	-1.1
4,379,931	-		DZA65_RS20220	0.38	+0.0
4,379,931	-		DZA65_RS20220	0.38	-1.3
4,379,931	-		DZA65_RS20220	0.38	-1.4
4,379,931	-		DZA65_RS20220	0.38	-1.9
4,379,931	-		DZA65_RS20220	0.38	-0.3
4,379,931	-		DZA65_RS20220	0.38	+0.3
4,379,931	-		DZA65_RS20220	0.38	-2.2
4,379,931	-		DZA65_RS20220	0.38	-2.3
4,379,931	-				-1.1
4,379,931	-		DZA65_RS20220	0.38	-1.5
4,379,931	-		DZA65_RS20220	0.38	-1.9
4,379,931	-		DZA65_RS20220	0.38	-2.2
4,379,931	-		DZA65_RS20220	0.38	-1.0
4,379,931	-		DZA65_RS20220	0.38	-2.1
4,379,932	+		DZA65_RS20220	0.38	-1.7
4,379,932	+		DZA65_RS20220	0.38	-0.6
4,379,933	-		DZA65_RS20220	0.38	-4.2
4,379,933	-		DZA65_RS20220	0.38	-0.2
4,379,933	-		DZA65_RS20220	0.38	-0.8
4,379,933	-		DZA65_RS20220	0.38	-1.5
4,379,933	-		DZA65_RS20220	0.38	-2.5
4,379,983	+		DZA65_RS20220	0.41	-2.4
4,379,983	+		DZA65_RS20220	0.41	-0.4
4,379,983	+		DZA65_RS20220	0.41	-1.3
4,379,984	-		DZA65_RS20220	0.41	+1.0
4,380,439	+		DZA65_RS20220	0.69	-0.1
4,380,466	+		DZA65_RS20220	0.70	-0.7
4,380,466	+		DZA65_RS20220	0.70	-2.4
4,380,466	+		DZA65_RS20220	0.70	-1.7
4,380,466	+		DZA65_RS20220	0.70	-1.2
4,380,466	+		DZA65_RS20220	0.70	-0.3
4,380,467	-		DZA65_RS20220	0.70	-0.6
4,380,467	-		DZA65_RS20220	0.70	-1.2
4,380,467	-		DZA65_RS20220	0.70	-0.3
4,380,467	-		DZA65_RS20220	0.70	+0.6
4,380,467	-		DZA65_RS20220	0.70	-0.5
4,380,467	-		DZA65_RS20220	0.70	-1.7
4,380,529	+		DZA65_RS20220	0.74	-0.6
4,380,529	+		DZA65_RS20220	0.74	+0.5
4,380,635	+		DZA65_RS20220	0.81	-0.5
4,380,635	+		DZA65_RS20220	0.81	-1.5
4,380,635	+		DZA65_RS20220	0.81	-1.3
4,380,636	-		DZA65_RS20220	0.81	-1.5
4,380,959	+				-0.1
4,380,959	+				-0.5
4,380,959	+				-1.5
4,380,959	+				+0.3
4,381,055	+				+1.0
4,381,055	+				+0.6
4,381,055	+				-0.6
4,381,055	+				+0.0
4,381,055	+				-0.2
4,381,056	-				-0.8
4,381,056	-				-0.9
4,381,056	-				+0.8
4,381,150	-				+2.1
4,381,157	+				-0.4
4,381,157	+				+1.2
4,381,158	-				-0.2
4,381,158	-				-0.3
4,381,158	-				-1.1
4,381,235	+				-0.3
4,381,236	-				-0.8
4,381,266	+				+1.6
4,381,266	+				+0.2
4,381,266	+				+1.1
4,381,266	+				+0.9
4,381,266	+				-0.5
4,381,267	-				+0.7
4,381,267	-				+0.4
4,381,271	+				-0.5
4,381,271	+				-0.1
4,381,271	+				+0.0
4,381,271	+				+0.3
4,381,272	-				-1.2
4,381,272	-				-0.1
4,381,272	-				+1.1
4,381,280	+				-0.1
4,381,280	+				+0.4
4,381,281	-				+0.7
4,381,389	+				+0.5
4,381,432	+				-0.9
4,381,432	+				+0.3
4,381,432	+				+1.5
4,381,488	+				-0.1
4,381,488	+				-0.2
4,381,489	-				-0.9
4,381,508	+				-1.1
4,381,508	+				-0.4
4,381,508	+				-2.8
4,381,615	+				-0.3
4,381,616	-				-1.1
4,381,719	+		DZA65_RS20225	0.17	+0.6
4,381,719	+		DZA65_RS20225	0.17	-0.5
4,381,775	+		DZA65_RS20225	0.21	+0.2
4,381,775	+		DZA65_RS20225	0.21	-0.3
4,381,775	+		DZA65_RS20225	0.21	-2.3
4,381,776	-		DZA65_RS20225	0.21	+0.1
4,381,776	-		DZA65_RS20225	0.21	+0.7
4,381,776	-		DZA65_RS20225	0.21	-0.5
4,381,776	-		DZA65_RS20225	0.21	-0.1
4,381,776	-		DZA65_RS20225	0.21	+0.1
4,381,776	-		DZA65_RS20225	0.21	+0.9
4,381,885	+		DZA65_RS20225	0.29	+0.1
4,381,885	+		DZA65_RS20225	0.29	+1.3
4,381,885	+		DZA65_RS20225	0.29	-0.3
4,381,934	+		DZA65_RS20225	0.32	-0.5
4,381,934	+		DZA65_RS20225	0.32	+0.6
4,381,935	-		DZA65_RS20225	0.33	+0.7