Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16170

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,504,475	+		DZA65_RS16165	0.69	-0.8
3,504,475	+		DZA65_RS16165	0.69	-2.9
3,504,476	-		DZA65_RS16165	0.69	-1.9
3,504,476	-		DZA65_RS16165	0.69	-0.8
3,504,476	-		DZA65_RS16165	0.69	-1.9
3,504,530	+				-0.1
3,504,531	-		DZA65_RS16165	0.71	-1.6
3,504,531	-		DZA65_RS16165	0.71	-0.8
3,504,544	+		DZA65_RS16165	0.71	-1.1
3,504,544	+				-0.1
3,504,544	+		DZA65_RS16165	0.71	-0.3
3,504,544	+		DZA65_RS16165	0.71	+0.2
3,504,544	+				-0.6
3,504,545	-		DZA65_RS16165	0.71	+0.9
3,504,545	-		DZA65_RS16165	0.71	+0.1
3,504,580	+		DZA65_RS16165	0.72	-1.1
3,504,580	+		DZA65_RS16165	0.72	+0.3
3,504,581	-		DZA65_RS16165	0.72	-1.1
3,504,581	-		DZA65_RS16165	0.72	-1.1
3,504,581	-		DZA65_RS16165	0.72	-0.7
3,504,581	-		DZA65_RS16165	0.72	-0.9
3,504,666	+		DZA65_RS16165	0.75	-1.0
3,504,666	+				+0.2
3,504,667	-		DZA65_RS16165	0.75	-0.1
3,504,667	-		DZA65_RS16165	0.75	+0.2
3,504,786	-		DZA65_RS16165	0.79	-1.0
3,504,786	-		DZA65_RS16165	0.79	-1.1
3,504,786	-		DZA65_RS16165	0.79	-1.1
3,504,861	+		DZA65_RS16165	0.81	-1.9
3,504,886	-		DZA65_RS16165	0.82	-0.2
3,504,886	-		DZA65_RS16165	0.82	-2.4
3,504,886	-		DZA65_RS16165	0.82	-1.1
3,504,886	-		DZA65_RS16165	0.82	-0.6
3,504,941	+		DZA65_RS16165	0.84	-0.6
3,504,941	+		DZA65_RS16165	0.84	-2.1
3,504,952	+				-1.1
3,504,952	+		DZA65_RS16165	0.84	+0.3
3,504,952	+		DZA65_RS16165	0.84	+0.4
3,504,952	+		DZA65_RS16165	0.84	-0.7
3,504,952	+		DZA65_RS16165	0.84	-1.1
3,504,952	+		DZA65_RS16165	0.84	-1.2
3,504,952	+		DZA65_RS16165	0.84	-0.4
3,504,952	+		DZA65_RS16165	0.84	-1.7
3,504,952	+		DZA65_RS16165	0.84	-1.3
3,504,953	-				-0.6
3,504,953	-		DZA65_RS16165	0.84	+0.6
3,504,953	-		DZA65_RS16165	0.84	-0.5
3,504,953	-		DZA65_RS16165	0.84	-1.1
3,504,973	+		DZA65_RS16165	0.85	-0.5
3,504,974	-		DZA65_RS16165	0.85	-2.1
3,504,974	-		DZA65_RS16165	0.85	-0.6
3,504,974	-		DZA65_RS16165	0.85	-2.3
3,504,985	-		DZA65_RS16165	0.85	-0.1
3,505,192	+				-0.5
3,505,192	+				-1.1
3,505,193	-				-0.4
3,505,193	-				-2.0
3,505,193	-				+0.2
3,505,318	-				-1.1
3,505,318	-				-2.5
3,505,359	+				+0.1
3,505,360	-				-1.2
3,505,375	+				+0.5
3,505,376	-				+0.1
3,505,376	-				-1.8
3,505,460	+				-0.6
3,505,460	+				+0.1
3,505,564	-				-0.9
3,505,762	+		DZA65_RS16170	0.10	-1.1
3,505,763	-		DZA65_RS16170	0.10	-2.0
3,505,763	-		DZA65_RS16170	0.10	-0.8
3,505,763	-		DZA65_RS16170	0.10	+0.1
3,505,763	-		DZA65_RS16170	0.10	-0.1
3,505,822	-		DZA65_RS16170	0.12	+0.1
3,505,861	+		DZA65_RS16170	0.14	-0.8
3,505,884	+				+0.9
3,505,900	+		DZA65_RS16170	0.15	-0.6
3,505,900	+		DZA65_RS16170	0.15	-1.1
3,505,900	+		DZA65_RS16170	0.15	-1.6
3,505,901	-		DZA65_RS16170	0.15	-0.3
3,505,902	+		DZA65_RS16170	0.15	-1.4
3,505,902	+		DZA65_RS16170	0.15	-0.5
3,505,902	+		DZA65_RS16170	0.15	-1.9
3,505,902	+		DZA65_RS16170	0.15	-1.2
3,505,903	-		DZA65_RS16170	0.15	+1.9
3,505,903	-		DZA65_RS16170	0.15	-2.4
3,505,903	-		DZA65_RS16170	0.15	-0.9
3,505,903	-		DZA65_RS16170	0.15	-1.1
3,505,903	-		DZA65_RS16170	0.15	-1.4
3,505,903	-		DZA65_RS16170	0.15	-2.1
3,505,909	-		DZA65_RS16170	0.15	-0.8
3,506,098	+		DZA65_RS16170	0.21	-0.3
3,506,181	+		DZA65_RS16170	0.24	-0.6
3,506,181	+		DZA65_RS16170	0.24	+0.2
3,506,181	+				+2.3
3,506,182	-		DZA65_RS16170	0.24	-1.4
3,506,316	-		DZA65_RS16170	0.28	-1.2
3,506,571	+		DZA65_RS16170	0.37	-0.5
3,506,571	+		DZA65_RS16170	0.37	-0.9
3,506,571	+		DZA65_RS16170	0.37	-1.4
3,506,571	+		DZA65_RS16170	0.37	+0.4
3,506,571	+		DZA65_RS16170	0.37	+0.5
3,506,571	+		DZA65_RS16170	0.37	-0.9
3,506,571	+		DZA65_RS16170	0.37	-1.2
3,506,571	+		DZA65_RS16170	0.37	-1.1
3,506,571	+		DZA65_RS16170	0.37	-2.0
3,506,572	-		DZA65_RS16170	0.37	-0.4
3,506,572	-				+0.9
3,506,572	-		DZA65_RS16170	0.37	+0.2
3,506,572	-		DZA65_RS16170	0.37	+0.4
3,506,572	-		DZA65_RS16170	0.37	-1.1
3,506,572	-		DZA65_RS16170	0.37	-0.6
3,506,572	-		DZA65_RS16170	0.37	-1.1
3,506,572	-		DZA65_RS16170	0.37	-0.7
3,506,572	-		DZA65_RS16170	0.37	-0.8
3,506,572	-		DZA65_RS16170	0.37	-0.8
3,506,572	-		DZA65_RS16170	0.37	-0.1
3,506,572	-		DZA65_RS16170	0.37	-0.8
3,506,591	+		DZA65_RS16170	0.37	-0.6
3,506,591	+				-1.4
3,506,592	-		DZA65_RS16170	0.37	-1.1
3,506,592	-		DZA65_RS16170	0.37	-1.1
3,506,653	+		DZA65_RS16170	0.39	-2.3
3,506,653	+		DZA65_RS16170	0.39	-0.6
3,506,653	+		DZA65_RS16170	0.39	-0.4
3,506,653	+		DZA65_RS16170	0.39	+0.4
3,506,653	+		DZA65_RS16170	0.39	-0.9
3,506,654	-		DZA65_RS16170	0.39	-1.1
3,506,654	-		DZA65_RS16170	0.39	-0.1
3,506,654	-		DZA65_RS16170	0.39	-1.4
3,506,654	-		DZA65_RS16170	0.39	-2.1
3,506,654	-		DZA65_RS16170	0.39	-1.3
3,506,739	-		DZA65_RS16170	0.42	-2.4
3,506,834	+		DZA65_RS16170	0.45	-0.4
3,506,835	-		DZA65_RS16170	0.45	-0.2
3,507,007	+		DZA65_RS16170	0.51	-0.3
3,507,007	+		DZA65_RS16170	0.51	-1.9
3,507,007	+		DZA65_RS16170	0.51	-0.8
3,507,044	+				-0.1
3,507,044	+				-0.1
3,507,045	-		DZA65_RS16170	0.52	-0.4
3,507,045	-		DZA65_RS16170	0.52	-0.4
3,507,045	-		DZA65_RS16170	0.52	-0.8
3,507,045	-		DZA65_RS16170	0.52	+0.6
3,507,069	+		DZA65_RS16170	0.53	+0.5
3,507,069	+		DZA65_RS16170	0.53	-0.9
3,507,069	+		DZA65_RS16170	0.53	+0.5
3,507,069	+		DZA65_RS16170	0.53	-0.5
3,507,069	+		DZA65_RS16170	0.53	-1.2
3,507,069	+		DZA65_RS16170	0.53	-0.2
3,507,070	-		DZA65_RS16170	0.53	-0.7
3,507,366	+		DZA65_RS16170	0.62	+0.5
3,507,561	+		DZA65_RS16170	0.69	-1.4
3,507,562	-		DZA65_RS16170	0.69	-1.4
3,507,562	-		DZA65_RS16170	0.69	-0.6
3,507,562	-		DZA65_RS16170	0.69	-1.2
3,507,657	+		DZA65_RS16170	0.72	-0.6
3,507,658	-		DZA65_RS16170	0.72	-0.1
3,507,658	-		DZA65_RS16170	0.72	-0.6
3,507,658	-		DZA65_RS16170	0.72	-1.5
3,507,676	-		DZA65_RS16170	0.72	-0.3
3,507,676	-		DZA65_RS16170	0.72	-0.4
3,507,676	-		DZA65_RS16170	0.72	-0.6
3,507,676	-		DZA65_RS16170	0.72	-0.5
3,507,676	-		DZA65_RS16170	0.72	-0.1
3,507,676	-		DZA65_RS16170	0.72	-2.3
3,507,705	+		DZA65_RS16170	0.73	-0.1
3,507,731	+		DZA65_RS16170	0.74	-1.5
3,507,731	+		DZA65_RS16170	0.74	+0.2
3,507,935	+		DZA65_RS16170	0.81	+0.4
3,508,029	+		DZA65_RS16170	0.84	-1.7
3,508,029	+		DZA65_RS16170	0.84	-1.3
3,508,030	-		DZA65_RS16170	0.84	-0.1
3,508,030	-		DZA65_RS16170	0.84	-0.8
3,508,030	-		DZA65_RS16170	0.84	-2.2
3,508,030	-		DZA65_RS16170	0.84	-0.5
3,508,046	-		DZA65_RS16170	0.84	-1.1
3,508,050	+		DZA65_RS16170	0.84	-0.7
3,508,050	+		DZA65_RS16170	0.84	-1.4
3,508,050	+		DZA65_RS16170	0.84	-1.1
3,508,050	+		DZA65_RS16170	0.84	-1.4
3,508,050	+		DZA65_RS16170	0.84	-0.1
3,508,050	+		DZA65_RS16170	0.84	-0.4
3,508,050	+		DZA65_RS16170	0.84	-1.1
3,508,051	-		DZA65_RS16170	0.84	-1.4
3,508,051	-		DZA65_RS16170	0.84	-1.0
3,508,051	-		DZA65_RS16170	0.84	-0.9
3,508,051	-		DZA65_RS16170	0.84	-0.5
3,508,051	-		DZA65_RS16170	0.84	-1.4
3,508,051	-		DZA65_RS16170	0.84	+0.0
3,508,051	-		DZA65_RS16170	0.84	-1.0
3,508,051	-		DZA65_RS16170	0.84	-0.1
3,508,051	-		DZA65_RS16170	0.84	-1.1
3,508,051	-				-1.1
3,508,411	+				+0.5
3,508,411	+				-2.2
3,508,411	+				+0.6
3,508,434	+				-0.3
3,508,434	+				-1.9
3,508,434	+				-0.6
3,508,434	+				-0.6
3,508,434	+				-0.9
3,508,435	-				-0.5
3,508,435	-				-1.2
3,508,435	-				-0.2
3,508,435	-				-1.9
3,508,435	-				-0.6
3,508,435	-				-0.3
3,508,452	+				-0.8
3,508,452	+				-1.0
3,508,452	+				-0.1
3,508,452	+				-1.9
3,508,452	+				-0.5
3,508,452	+				-1.9
3,508,453	-				+0.3
3,508,453	-				-0.4
3,508,453	-				-2.2
3,508,511	+				+1.7
3,508,512	-				+1.2
3,508,512	-				-1.5
3,508,512	-				-0.9
3,508,551	-				-2.5
3,508,594	+				-0.1
3,508,606	+				+0.9
3,508,607	-				-0.9
3,508,676	+				+0.4
3,508,677	-				+0.9
3,508,677	-				-0.9
3,508,677	-				-0.5
3,508,677	-				+0.9
3,508,776	+		DZA65_RS16175	0.11	+0.3
3,508,776	+		DZA65_RS16175	0.11	-0.3
3,508,776	+		DZA65_RS16175	0.11	-0.1
3,508,776	+		DZA65_RS16175	0.11	-0.4
3,508,776	+		DZA65_RS16175	0.11	+0.9
3,508,776	+		DZA65_RS16175	0.11	-0.1
3,508,776	+		DZA65_RS16175	0.11	-0.1
3,508,776	+		DZA65_RS16175	0.11	-0.4
3,508,777	-		DZA65_RS16175	0.11	+0.1
3,508,777	-		DZA65_RS16175	0.11	-0.7
3,508,777	-		DZA65_RS16175	0.11	+0.1
3,508,777	-		DZA65_RS16175	0.11	-1.0
3,508,777	-		DZA65_RS16175	0.11	+0.4
3,508,777	-		DZA65_RS16175	0.11	+0.5
3,508,777	-		DZA65_RS16175	0.11	+0.8
3,508,844	+		DZA65_RS16175	0.16	-0.9
3,508,844	+		DZA65_RS16175	0.16	+0.4
3,508,844	+		DZA65_RS16175	0.16	+0.5
3,508,844	+		DZA65_RS16175	0.16	+0.3
3,508,844	+		DZA65_RS16175	0.16	-1.5
3,508,845	-		DZA65_RS16175	0.16	-0.6
3,509,010	+		DZA65_RS16175	0.28	+0.1
3,509,011	-		DZA65_RS16175	0.28	-0.5
3,509,094	+		DZA65_RS16175	0.34	-0.3
3,509,095	-		DZA65_RS16175	0.34	-0.1
3,509,095	-		DZA65_RS16175	0.34	-0.7
3,509,126	+		DZA65_RS16175	0.36	-0.9
3,509,127	-		DZA65_RS16175	0.36	+0.1
3,509,234	+		DZA65_RS16175	0.44	-0.9
3,509,240	+		DZA65_RS16175	0.44	-0.1
3,509,240	+		DZA65_RS16175	0.44	-0.3
3,509,241	-		DZA65_RS16175	0.44	-0.4
3,509,405	+		DZA65_RS16175	0.56	-0.5
3,509,406	-		DZA65_RS16175	0.56	+0.6
3,509,450	+		DZA65_RS16175	0.59	-0.6
3,509,496	+		DZA65_RS16175	0.63	-0.2
3,509,497	-		DZA65_RS16175	0.63	+0.1