Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07250

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS07240 and DZA65_RS07245 overlap by 4 nucleotidesDZA65_RS07245 and DZA65_RS07250 overlap by 4 nucleotidesDZA65_RS07250 and DZA65_RS07255 overlap by 4 nucleotides DZA65_RS07240: DZA65_RS07240 - ABC transporter permease, at 1,505,100 to 1,506,038 _RS07240 DZA65_RS07245: DZA65_RS07245 - ABC transporter permease, at 1,506,035 to 1,506,889 _RS07245 DZA65_RS07250: DZA65_RS07250 - ABC transporter ATP-binding protein, at 1,506,886 to 1,507,905 _RS07250 DZA65_RS07255: DZA65_RS07255 - ATP-binding cassette domain-containing protein, at 1,507,902 to 1,508,993 _RS07255 Position (kb) 1506 1507 1508Strain fitness (log2 ratio) -2 -1 0 1 2at 1505.931 kb on + strand, within DZA65_RS07240at 1505.931 kb on + strand, within DZA65_RS07240at 1505.932 kb on - strand, within DZA65_RS07240at 1506.034 kb on + strandat 1506.035 kb on - strandat 1506.244 kb on + strand, within DZA65_RS07245at 1506.244 kb on + strand, within DZA65_RS07245at 1506.245 kb on - strand, within DZA65_RS07245at 1506.248 kb on + strand, within DZA65_RS07245at 1506.248 kb on + strand, within DZA65_RS07245at 1506.248 kb on + strand, within DZA65_RS07245at 1506.249 kb on - strand, within DZA65_RS07245at 1506.249 kb on - strand, within DZA65_RS07245at 1506.249 kb on - strand, within DZA65_RS07245at 1506.273 kb on + strand, within DZA65_RS07245at 1506.274 kb on - strand, within DZA65_RS07245at 1506.365 kb on + strand, within DZA65_RS07245at 1506.448 kb on + strand, within DZA65_RS07245at 1506.448 kb on + strand, within DZA65_RS07245at 1506.448 kb on + strand, within DZA65_RS07245at 1506.448 kb on + strand, within DZA65_RS07245at 1506.449 kb on - strand, within DZA65_RS07245at 1506.449 kb on - strand, within DZA65_RS07245at 1506.452 kb on - strand, within DZA65_RS07245at 1506.452 kb on - strand, within DZA65_RS07245at 1506.485 kb on + strand, within DZA65_RS07245at 1506.485 kb on + strand, within DZA65_RS07245at 1506.485 kb on + strand, within DZA65_RS07245at 1506.486 kb on - strand, within DZA65_RS07245at 1506.486 kb on - strand, within DZA65_RS07245at 1506.486 kb on - strand, within DZA65_RS07245at 1506.518 kb on + strand, within DZA65_RS07245at 1506.566 kb on + strand, within DZA65_RS07245at 1506.566 kb on + strand, within DZA65_RS07245at 1506.567 kb on - strand, within DZA65_RS07245at 1506.567 kb on - strand, within DZA65_RS07245at 1506.567 kb on - strand, within DZA65_RS07245at 1506.567 kb on - strand, within DZA65_RS07245at 1506.567 kb on - strand, within DZA65_RS07245at 1506.707 kb on + strand, within DZA65_RS07245at 1506.707 kb on + strand, within DZA65_RS07245at 1506.708 kb on - strand, within DZA65_RS07245at 1506.708 kb on - strand, within DZA65_RS07245at 1506.751 kb on - strand, within DZA65_RS07245at 1506.779 kb on - strand, within DZA65_RS07245at 1506.822 kb on + strandat 1506.822 kb on + strandat 1506.823 kb on - strandat 1506.823 kb on - strandat 1506.894 kb on - strandat 1506.902 kb on + strandat 1506.903 kb on - strandat 1506.920 kb on + strandat 1506.920 kb on + strandat 1506.920 kb on + strandat 1506.920 kb on + strandat 1506.920 kb on + strandat 1506.921 kb on - strandat 1506.921 kb on - strandat 1506.938 kb on + strandat 1506.939 kb on - strandat 1507.173 kb on - strand, within DZA65_RS07250at 1507.173 kb on - strand, within DZA65_RS07250at 1507.173 kb on - strand, within DZA65_RS07250at 1507.173 kb on - strand, within DZA65_RS07250at 1507.221 kb on + strand, within DZA65_RS07250at 1507.222 kb on - strand, within DZA65_RS07250at 1507.364 kb on - strand, within DZA65_RS07250at 1507.562 kb on + strand, within DZA65_RS07250at 1507.597 kb on + strand, within DZA65_RS07250at 1507.597 kb on + strandat 1507.597 kb on + strand, within DZA65_RS07250at 1507.597 kb on + strand, within DZA65_RS07250at 1507.597 kb on + strand, within DZA65_RS07250at 1507.597 kb on + strand, within DZA65_RS07250at 1507.598 kb on - strand, within DZA65_RS07250at 1507.598 kb on - strand, within DZA65_RS07250at 1507.598 kb on - strand, within DZA65_RS07250at 1507.598 kb on - strand, within DZA65_RS07250at 1507.598 kb on - strand, within DZA65_RS07250at 1507.660 kb on + strand, within DZA65_RS07250at 1507.660 kb on + strand, within DZA65_RS07250at 1507.660 kb on + strand, within DZA65_RS07250at 1507.660 kb on + strand, within DZA65_RS07250at 1507.662 kb on + strand, within DZA65_RS07250at 1507.662 kb on + strand, within DZA65_RS07250at 1507.663 kb on - strand, within DZA65_RS07250at 1507.915 kb on + strandat 1507.915 kb on + strandat 1507.915 kb on + strandat 1507.915 kb on + strandat 1507.915 kb on + strandat 1507.916 kb on - strandat 1507.916 kb on - strandat 1507.916 kb on - strandat 1507.916 kb on - strandat 1507.916 kb on - strandat 1507.916 kb on - strandat 1507.916 kb on - strandat 1507.917 kb on + strandat 1507.917 kb on + strandat 1507.918 kb on - strandat 1507.918 kb on - strandat 1507.918 kb on - strandat 1508.069 kb on + strand, within DZA65_RS07255at 1508.110 kb on + strand, within DZA65_RS07255at 1508.110 kb on + strand, within DZA65_RS07255at 1508.162 kb on + strand, within DZA65_RS07255at 1508.276 kb on + strand, within DZA65_RS07255at 1508.276 kb on + strand, within DZA65_RS07255at 1508.277 kb on - strand, within DZA65_RS07255at 1508.488 kb on + strand, within DZA65_RS07255at 1508.489 kb on - strand, within DZA65_RS07255at 1508.595 kb on + strand, within DZA65_RS07255at 1508.595 kb on + strand, within DZA65_RS07255at 1508.595 kb on + strand, within DZA65_RS07255at 1508.595 kb on + strand, within DZA65_RS07255at 1508.595 kb on + strand, within DZA65_RS07255at 1508.595 kb on + strand, within DZA65_RS07255at 1508.595 kb on + strand, within DZA65_RS07255at 1508.595 kb on + strand, within DZA65_RS07255at 1508.595 kb on + strand, within DZA65_RS07255at 1508.596 kb on - strand, within DZA65_RS07255at 1508.596 kb on - strand, within DZA65_RS07255at 1508.596 kb on - strand, within DZA65_RS07255at 1508.596 kb on - strand, within DZA65_RS07255at 1508.596 kb on - strand, within DZA65_RS07255at 1508.596 kb on - strand, within DZA65_RS07255at 1508.606 kb on + strand, within DZA65_RS07255at 1508.606 kb on + strand, within DZA65_RS07255at 1508.658 kb on + strand, within DZA65_RS07255at 1508.659 kb on - strand, within DZA65_RS07255at 1508.681 kb on + strand, within DZA65_RS07255at 1508.827 kb on + strandat 1508.827 kb on + strand, within DZA65_RS07255at 1508.827 kb on + strand, within DZA65_RS07255at 1508.827 kb on + strand, within DZA65_RS07255at 1508.827 kb on + strand, within DZA65_RS07255at 1508.827 kb on + strand, within DZA65_RS07255at 1508.828 kb on - strand, within DZA65_RS07255at 1508.828 kb on - strand, within DZA65_RS07255at 1508.828 kb on - strand, within DZA65_RS07255at 1508.860 kb on + strand, within DZA65_RS07255at 1508.861 kb on - strand, within DZA65_RS07255

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,505,931 + DZA65_RS07240 0.88 -0.0
1,505,931 + DZA65_RS07240 0.88 -0.3
1,505,932 - DZA65_RS07240 0.89 +0.1
1,506,034 + -1.0
1,506,035 - +0.5
1,506,244 + DZA65_RS07245 0.24 +0.2
1,506,244 + DZA65_RS07245 0.24 +0.5
1,506,245 - DZA65_RS07245 0.25 +0.5
1,506,248 + DZA65_RS07245 0.25 +0.5
1,506,248 + DZA65_RS07245 0.25 -0.5
1,506,248 + DZA65_RS07245 0.25 +0.9
1,506,249 - DZA65_RS07245 0.25 -1.0
1,506,249 - DZA65_RS07245 0.25 -1.5
1,506,249 - DZA65_RS07245 0.25 +1.1
1,506,273 + DZA65_RS07245 0.28 +0.8
1,506,274 - DZA65_RS07245 0.28 +0.3
1,506,365 + DZA65_RS07245 0.39 -1.6
1,506,448 + DZA65_RS07245 0.48 +0.3
1,506,448 + DZA65_RS07245 0.48 -0.2
1,506,448 + DZA65_RS07245 0.48 +0.1
1,506,448 + DZA65_RS07245 0.48 +1.2
1,506,449 - DZA65_RS07245 0.48 -0.5
1,506,449 - DZA65_RS07245 0.48 -2.1
1,506,452 - DZA65_RS07245 0.49 +2.3
1,506,452 - DZA65_RS07245 0.49 +1.1
1,506,485 + DZA65_RS07245 0.53 +0.5
1,506,485 + DZA65_RS07245 0.53 +0.2
1,506,485 + DZA65_RS07245 0.53 -0.0
1,506,486 - DZA65_RS07245 0.53 +1.7
1,506,486 - DZA65_RS07245 0.53 -0.3
1,506,486 - DZA65_RS07245 0.53 -0.5
1,506,518 + DZA65_RS07245 0.56 +0.6
1,506,566 + DZA65_RS07245 0.62 +0.5
1,506,566 + DZA65_RS07245 0.62 -1.4
1,506,567 - DZA65_RS07245 0.62 +0.7
1,506,567 - DZA65_RS07245 0.62 -1.0
1,506,567 - DZA65_RS07245 0.62 +0.4
1,506,567 - DZA65_RS07245 0.62 -0.6
1,506,567 - DZA65_RS07245 0.62 -0.4
1,506,707 + DZA65_RS07245 0.79 +0.1
1,506,707 + DZA65_RS07245 0.79 +1.1
1,506,708 - DZA65_RS07245 0.79 -1.5
1,506,708 - DZA65_RS07245 0.79 +0.5
1,506,751 - DZA65_RS07245 0.84 +1.7
1,506,779 - DZA65_RS07245 0.87 -0.5
1,506,822 + -0.1
1,506,822 + +0.3
1,506,823 - +0.4
1,506,823 - +0.4
1,506,894 - +0.3
1,506,902 + -1.9
1,506,903 - -1.1
1,506,920 + +0.0
1,506,920 + +1.6
1,506,920 + -1.3
1,506,920 + -0.9
1,506,920 + -1.3
1,506,921 - +0.5
1,506,921 - -0.2
1,506,938 + -0.0
1,506,939 - -1.2
1,507,173 - DZA65_RS07250 0.28 +0.3
1,507,173 - DZA65_RS07250 0.28 -1.0
1,507,173 - DZA65_RS07250 0.28 -1.4
1,507,173 - DZA65_RS07250 0.28 +0.1
1,507,221 + DZA65_RS07250 0.33 +0.6
1,507,222 - DZA65_RS07250 0.33 +0.1
1,507,364 - DZA65_RS07250 0.47 -0.4
1,507,562 + DZA65_RS07250 0.66 +0.5
1,507,597 + DZA65_RS07250 0.70 -0.2
1,507,597 + +1.5
1,507,597 + DZA65_RS07250 0.70 -0.1
1,507,597 + DZA65_RS07250 0.70 -0.1
1,507,597 + DZA65_RS07250 0.70 -1.1
1,507,597 + DZA65_RS07250 0.70 -0.5
1,507,598 - DZA65_RS07250 0.70 +0.1
1,507,598 - DZA65_RS07250 0.70 -0.3
1,507,598 - DZA65_RS07250 0.70 -1.0
1,507,598 - DZA65_RS07250 0.70 -0.5
1,507,598 - DZA65_RS07250 0.70 -0.9
1,507,660 + DZA65_RS07250 0.76 -1.1
1,507,660 + DZA65_RS07250 0.76 -0.7
1,507,660 + DZA65_RS07250 0.76 -0.4
1,507,660 + DZA65_RS07250 0.76 +0.2
1,507,662 + DZA65_RS07250 0.76 +0.1
1,507,662 + DZA65_RS07250 0.76 -0.5
1,507,663 - DZA65_RS07250 0.76 +0.5
1,507,915 + +0.6
1,507,915 + -1.1
1,507,915 + +0.7
1,507,915 + +0.9
1,507,915 + -0.4
1,507,916 - -0.3
1,507,916 - -0.9
1,507,916 - -1.7
1,507,916 - -0.7
1,507,916 - -1.3
1,507,916 - +1.0
1,507,916 - -0.0
1,507,917 + -0.4
1,507,917 + +1.9
1,507,918 - -0.1
1,507,918 - +0.6
1,507,918 - +0.4
1,508,069 + DZA65_RS07255 0.15 -0.7
1,508,110 + DZA65_RS07255 0.19 -0.1
1,508,110 + DZA65_RS07255 0.19 +0.1
1,508,162 + DZA65_RS07255 0.24 +0.1
1,508,276 + DZA65_RS07255 0.34 -0.0
1,508,276 + DZA65_RS07255 0.34 -0.8
1,508,277 - DZA65_RS07255 0.34 +1.0
1,508,488 + DZA65_RS07255 0.54 +1.4
1,508,489 - DZA65_RS07255 0.54 -0.9
1,508,595 + DZA65_RS07255 0.63 +0.1
1,508,595 + DZA65_RS07255 0.63 -0.3
1,508,595 + DZA65_RS07255 0.63 +0.4
1,508,595 + DZA65_RS07255 0.63 -0.2
1,508,595 + DZA65_RS07255 0.63 -0.7
1,508,595 + DZA65_RS07255 0.63 +0.0
1,508,595 + DZA65_RS07255 0.63 +1.0
1,508,595 + DZA65_RS07255 0.63 -0.5
1,508,595 + DZA65_RS07255 0.63 +1.1
1,508,596 - DZA65_RS07255 0.64 +0.4
1,508,596 - DZA65_RS07255 0.64 +0.5
1,508,596 - DZA65_RS07255 0.64 -0.1
1,508,596 - DZA65_RS07255 0.64 +0.6
1,508,596 - DZA65_RS07255 0.64 +0.7
1,508,596 - DZA65_RS07255 0.64 +0.2
1,508,606 + DZA65_RS07255 0.64 +0.2
1,508,606 + DZA65_RS07255 0.64 +1.0
1,508,658 + DZA65_RS07255 0.69 +0.5
1,508,659 - DZA65_RS07255 0.69 +0.5
1,508,681 + DZA65_RS07255 0.71 +0.0
1,508,827 + +0.1
1,508,827 + DZA65_RS07255 0.85 +0.4
1,508,827 + DZA65_RS07255 0.85 -1.8
1,508,827 + DZA65_RS07255 0.85 +0.4
1,508,827 + DZA65_RS07255 0.85 +0.3
1,508,827 + DZA65_RS07255 0.85 +0.1
1,508,828 - DZA65_RS07255 0.85 -0.7
1,508,828 - DZA65_RS07255 0.85 -0.5
1,508,828 - DZA65_RS07255 0.85 +0.2
1,508,860 + DZA65_RS07255 0.88 +0.1
1,508,861 - DZA65_RS07255 0.88 -0.0

Or see this region's nucleotide sequence