Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06020

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
1,242,054	-		DZA65_RS06015	0.88	+1.0
1,242,288	+				-0.2
1,242,288	+				+1.0
1,242,289	-				+1.0
1,242,289	-				+1.0
1,242,289	-				-1.3
1,242,289	-				-0.6
1,242,292	+				-0.8
1,242,292	+				+0.5
1,242,292	+				+0.5
1,242,301	-				+0.2
1,242,301	-				+0.1
1,242,302	+				-0.6
1,242,302	+				-0.4
1,242,302	+				+0.3
1,242,310	+				-0.2
1,242,310	+				+0.0
1,242,311	-				-0.0
1,242,314	+				+0.2
1,242,314	+				-0.0
1,242,315	-				-1.3
1,242,315	-				+0.7
1,242,375	+				+0.2
1,242,375	+				+0.2
1,242,376	-				-1.8
1,242,389	-				-0.2
1,242,415	-				-0.0
1,242,688	+		DZA65_RS06020	0.13	-0.0
1,242,809	+		DZA65_RS06020	0.18	+0.7
1,242,843	+		DZA65_RS06020	0.19	-0.2
1,242,843	+		DZA65_RS06020	0.19	-1.0
1,242,843	+				-0.0
1,242,856	+		DZA65_RS06020	0.20	-1.0
1,243,008	+		DZA65_RS06020	0.26	+0.2
1,243,009	-		DZA65_RS06020	0.26	-0.8
1,243,009	-		DZA65_RS06020	0.26	-0.1
1,243,073	+		DZA65_RS06020	0.29	-1.9
1,243,225	+		DZA65_RS06020	0.35	-0.7
1,243,225	+		DZA65_RS06020	0.35	-0.9
1,243,291	-		DZA65_RS06020	0.38	-1.6
1,243,362	-		DZA65_RS06020	0.41	-1.0
1,243,472	-		DZA65_RS06020	0.46	-2.5
1,243,513	+		DZA65_RS06020	0.48	-0.1
1,243,517	+		DZA65_RS06020	0.48	+0.8
1,243,518	-		DZA65_RS06020	0.48	+1.0
1,243,525	+		DZA65_RS06020	0.48	-2.7
1,243,580	+		DZA65_RS06020	0.50	-0.0
1,243,580	+		DZA65_RS06020	0.50	-0.6
1,243,580	+		DZA65_RS06020	0.50	-0.7
1,243,580	+		DZA65_RS06020	0.50	-1.3
1,243,581	-		DZA65_RS06020	0.50	-2.0
1,243,581	-		DZA65_RS06020	0.50	+0.8
1,243,592	-		DZA65_RS06020	0.51	-1.0
1,243,755	-		DZA65_RS06020	0.58	+2.9
1,243,991	+		DZA65_RS06020	0.68	-1.2
1,243,991	+		DZA65_RS06020	0.68	-1.8
1,244,014	+		DZA65_RS06020	0.69	-0.4
1,244,014	+		DZA65_RS06020	0.69	+0.2
1,244,089	+		DZA65_RS06020	0.72	-1.0
1,244,120	+		DZA65_RS06020	0.73	+0.8
1,244,120	+		DZA65_RS06020	0.73	+1.0
1,244,121	-		DZA65_RS06020	0.73	-0.5
1,244,264	+		DZA65_RS06020	0.79	-0.2
1,244,264	+		DZA65_RS06020	0.79	-1.8
1,244,264	+		DZA65_RS06020	0.79	+0.2
1,244,264	+				+2.6
1,244,265	-		DZA65_RS06020	0.79	+0.6
1,244,751	-				-1.2
1,244,829	+				+1.2
1,244,834	+				+1.0
1,244,835	-				-1.3
1,244,866	+				+0.2
1,244,866	+				-0.4
1,244,866	+				-0.0
1,244,866	+				+0.3
1,244,866	+				+0.8
1,244,866	+				-0.3
1,244,867	-				-1.1
1,244,867	-				-0.4
1,244,867	-				+0.4
1,244,885	+				-0.9
1,244,886	-				+1.6
1,244,886	-				-0.3
1,244,891	+				-0.7
1,244,891	+				-0.6
1,244,891	+				+0.4
1,244,892	-				-1.5
1,244,917	+				+0.1
1,244,917	+				+0.5
1,244,917	+				+0.2
1,244,918	-				-0.4
1,244,918	-				+0.3
1,244,920	+				+0.5
1,244,920	+				-0.0
1,244,921	-				+0.2
1,244,921	-				-0.0
1,244,921	-				-0.8
1,244,921	-				-0.4
1,244,921	-				-1.6
1,244,921	-				+0.2
1,244,926	+				-0.6
1,244,926	+				+0.1
1,244,926	+				+0.7
1,244,926	+				-1.0
1,244,927	-				-0.0
1,244,927	-				+0.7
1,244,927	-				-1.5
1,244,927	-				-0.9
1,245,030	+		DZA65_RS06025	0.30	+0.1
1,245,030	+		DZA65_RS06025	0.30	-0.2
1,245,030	+		DZA65_RS06025	0.30	-2.2
1,245,031	-		DZA65_RS06025	0.31	+0.1
1,245,174	-		DZA65_RS06025	0.83	-0.5
1,245,224	+				-0.3
1,245,225	-				+2.0
1,245,225	-				-0.1
1,245,225	-				+0.0
1,245,225	-				+0.0
1,245,225	-				-0.2
1,245,228	+				-0.8
1,245,269	+				+0.8
1,245,269	+				+0.5
1,245,269	+				-0.6
1,245,270	-				+1.7
1,245,270	-				-0.5
1,245,290	+				-1.4
1,245,295	+				-0.3
1,245,296	-				-0.5
1,245,296	-				-0.8
1,245,296	-				+0.2
1,245,300	+				+0.5
1,245,300	+				-1.8
1,245,300	+				+0.7
1,245,300	+				-0.3
1,245,300	+				+0.3
1,245,300	+				-2.2
1,245,300	+				-0.5
1,245,300	+				+0.2
1,245,301	-				-0.0
1,245,301	-				+0.3
1,245,302	+				-1.6
1,245,302	+				-0.4
1,245,302	+				-1.0
1,245,302	+				-1.0
1,245,302	+				+0.6
1,245,302	+				-0.2
1,245,302	+				+0.5
1,245,302	+				-0.0
1,245,302	+				-0.2
1,245,302	+				-1.1
1,245,303	-				-0.8
1,245,303	-				-0.2
1,245,303	-				-0.6
1,245,303	-				+0.8
1,245,303	-				-2.6
1,245,303	-				-0.1
1,245,317	+				-0.9
1,245,317	+				-1.1
1,245,317	+				-0.0
1,245,317	+				-0.8
1,245,318	-				+0.7
1,245,318	-				+0.0
1,245,318	-				-0.6
1,245,318	-				-0.5
1,245,318	-				+0.2
1,245,346	-				+0.6
1,245,352	-				+1.5
1,245,357	+				-0.9
1,245,368	+				+0.1
1,245,368	+				-0.5
1,245,369	-				+0.7
1,245,369	-				+0.2
1,245,398	+				+0.5
1,245,398	+				-1.0
1,245,398	+				+0.1
1,245,398	+				-0.7
1,245,398	+				-0.0
1,245,399	-				-1.5
1,245,399	-				+0.2
1,245,453	+				-0.2
1,245,454	-				+1.2
1,245,454	-				+2.0
1,245,454	-				-0.6
1,245,474	+				+0.7
1,245,474	+				+0.3
1,245,474	+				-0.7
1,245,474	+				-0.6
1,245,474	+				+0.3
1,245,475	-				+0.4
1,245,475	-				-0.4
1,245,475	-				-0.2
1,245,475	-				-1.4
1,245,571	+				-1.6
1,245,572	-				-0.5
1,245,651	-				+0.3
1,245,721	+		DZA65_RS06030	0.13	-1.3
1,245,721	+		DZA65_RS06030	0.13	-1.7
1,245,721	+		DZA65_RS06030	0.13	-0.5
1,245,721	+		DZA65_RS06030	0.13	+0.0
1,245,721	+		DZA65_RS06030	0.13	-0.8
1,245,721	+		DZA65_RS06030	0.13	-1.0
1,245,721	+		DZA65_RS06030	0.13	+0.3
1,245,721	+		DZA65_RS06030	0.13	-0.0
1,245,722	-		DZA65_RS06030	0.13	-0.5
1,245,722	-		DZA65_RS06030	0.13	-1.5
1,245,722	-		DZA65_RS06030	0.13	-0.8
1,245,722	-		DZA65_RS06030	0.13	-2.2
1,245,722	-		DZA65_RS06030	0.13	-0.4
1,245,722	-		DZA65_RS06030	0.13	+0.2
1,245,722	-		DZA65_RS06030	0.13	-0.5
1,245,722	-		DZA65_RS06030	0.13	-1.2
1,245,723	+		DZA65_RS06030	0.13	+0.3
1,245,723	+		DZA65_RS06030	0.13	-0.2
1,245,723	+		DZA65_RS06030	0.13	+0.3
1,245,723	+		DZA65_RS06030	0.13	+1.6
1,245,723	+		DZA65_RS06030	0.13	-0.3
1,245,723	+		DZA65_RS06030	0.13	+0.1
1,245,723	+		DZA65_RS06030	0.13	+0.6
1,245,723	+		DZA65_RS06030	0.13	+0.1
1,245,723	+		DZA65_RS06030	0.13	-0.5
1,245,723	+		DZA65_RS06030	0.13	-0.2
1,245,723	+		DZA65_RS06030	0.13	-0.5
1,245,724	-		DZA65_RS06030	0.13	+0.1
1,245,724	-		DZA65_RS06030	0.13	-0.0
1,245,724	-		DZA65_RS06030	0.13	-0.6
1,245,738	+		DZA65_RS06030	0.14	+0.2
1,245,738	+		DZA65_RS06030	0.14	+0.3