Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03725 and DZA65_RS03730 overlap by 4 nucleotides DZA65_RS03730 and DZA65_RS03735 overlap by 8 nucleotides DZA65_RS03735 and DZA65_RS03740 are separated by 42 nucleotides
DZA65_RS03725: DZA65_RS03725 - ABC transporter permease, at 787,041 to 788,099
_RS03725
DZA65_RS03730: DZA65_RS03730 - ABC transporter permease, at 788,096 to 789,001
_RS03730
DZA65_RS03735: DZA65_RS03735 - ATP-binding cassette domain-containing protein, at 788,994 to 789,869
_RS03735
DZA65_RS03740: DZA65_RS03740 - ABC transporter ATP-binding protein, at 789,912 to 790,685
_RS03740
Position (kb) 788
789
790 Strain fitness (log2 ratio) -2
-1
0
1
2 at 788.067 kb on + strand at 788.067 kb on + strand at 788.067 kb on + strand at 788.067 kb on + strand at 788.067 kb on + strand at 788.067 kb on + strand at 788.068 kb on - strand at 788.095 kb on + strand at 788.095 kb on + strand at 788.095 kb on + strand at 788.095 kb on + strand at 788.096 kb on - strand at 788.096 kb on - strand at 788.096 kb on - strand at 788.374 kb on + strand, within DZA65_RS03730 at 788.375 kb on - strand, within DZA65_RS03730 at 788.387 kb on + strand, within DZA65_RS03730 at 788.388 kb on - strand, within DZA65_RS03730 at 788.388 kb on - strand, within DZA65_RS03730 at 788.388 kb on - strand, within DZA65_RS03730 at 788.408 kb on + strand, within DZA65_RS03730 at 788.408 kb on + strand, within DZA65_RS03730 at 788.408 kb on + strand, within DZA65_RS03730 at 788.408 kb on + strand, within DZA65_RS03730 at 788.408 kb on + strand, within DZA65_RS03730 at 788.408 kb on + strand, within DZA65_RS03730 at 788.408 kb on + strand, within DZA65_RS03730 at 788.408 kb on + strand, within DZA65_RS03730 at 788.408 kb on + strand, within DZA65_RS03730 at 788.408 kb on + strand, within DZA65_RS03730 at 788.408 kb on + strand, within DZA65_RS03730 at 788.408 kb on + strand, within DZA65_RS03730 at 788.409 kb on - strand, within DZA65_RS03730 at 788.409 kb on - strand, within DZA65_RS03730 at 788.409 kb on - strand, within DZA65_RS03730 at 788.409 kb on - strand, within DZA65_RS03730 at 788.411 kb on - strand, within DZA65_RS03730 at 788.475 kb on - strand, within DZA65_RS03730 at 788.477 kb on + strand, within DZA65_RS03730 at 788.477 kb on + strand, within DZA65_RS03730 at 788.477 kb on + strand, within DZA65_RS03730 at 788.478 kb on - strand, within DZA65_RS03730 at 788.478 kb on - strand, within DZA65_RS03730 at 788.519 kb on - strand, within DZA65_RS03730 at 788.592 kb on + strand, within DZA65_RS03730 at 788.592 kb on + strand, within DZA65_RS03730 at 788.592 kb on + strand, within DZA65_RS03730 at 788.592 kb on + strand, within DZA65_RS03730 at 788.592 kb on + strand, within DZA65_RS03730 at 788.592 kb on + strand, within DZA65_RS03730 at 788.592 kb on + strand, within DZA65_RS03730 at 788.592 kb on + strand, within DZA65_RS03730 at 788.592 kb on + strand, within DZA65_RS03730 at 788.592 kb on + strand, within DZA65_RS03730 at 788.592 kb on + strand, within DZA65_RS03730 at 788.592 kb on + strand, within DZA65_RS03730 at 788.592 kb on + strand, within DZA65_RS03730 at 788.593 kb on - strand, within DZA65_RS03730 at 788.593 kb on - strand, within DZA65_RS03730 at 788.593 kb on - strand, within DZA65_RS03730 at 788.593 kb on - strand, within DZA65_RS03730 at 788.593 kb on - strand, within DZA65_RS03730 at 788.593 kb on - strand, within DZA65_RS03730 at 788.593 kb on - strand, within DZA65_RS03730 at 788.593 kb on - strand, within DZA65_RS03730 at 788.593 kb on - strand, within DZA65_RS03730 at 788.593 kb on - strand, within DZA65_RS03730 at 788.606 kb on - strand, within DZA65_RS03730 at 788.606 kb on - strand, within DZA65_RS03730 at 788.606 kb on - strand, within DZA65_RS03730 at 788.694 kb on + strand, within DZA65_RS03730 at 788.694 kb on + strand, within DZA65_RS03730 at 788.695 kb on - strand, within DZA65_RS03730 at 788.695 kb on - strand, within DZA65_RS03730 at 788.695 kb on - strand, within DZA65_RS03730 at 788.695 kb on - strand, within DZA65_RS03730 at 788.762 kb on - strand, within DZA65_RS03730 at 788.882 kb on + strand, within DZA65_RS03730 at 788.882 kb on + strand, within DZA65_RS03730 at 788.882 kb on + strand, within DZA65_RS03730 at 788.882 kb on + strand, within DZA65_RS03730 at 788.882 kb on + strand, within DZA65_RS03730 at 788.883 kb on - strand, within DZA65_RS03730 at 788.883 kb on - strand, within DZA65_RS03730 at 788.883 kb on - strand, within DZA65_RS03730 at 788.883 kb on - strand, within DZA65_RS03730 at 788.883 kb on - strand, within DZA65_RS03730 at 788.883 kb on - strand, within DZA65_RS03730 at 788.883 kb on - strand, within DZA65_RS03730 at 788.970 kb on + strand at 788.999 kb on + strand at 789.000 kb on - strand at 789.000 kb on - strand at 789.000 kb on - strand at 789.000 kb on - strand at 789.007 kb on + strand at 789.007 kb on + strand at 789.007 kb on + strand at 789.007 kb on + strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.173 kb on + strand, within DZA65_RS03735 at 789.243 kb on - strand, within DZA65_RS03735 at 789.330 kb on + strand, within DZA65_RS03735 at 789.330 kb on + strand, within DZA65_RS03735 at 789.330 kb on + strand at 789.331 kb on - strand, within DZA65_RS03735 at 789.378 kb on + strand, within DZA65_RS03735 at 789.378 kb on + strand, within DZA65_RS03735 at 789.378 kb on + strand, within DZA65_RS03735 at 789.378 kb on + strand, within DZA65_RS03735 at 789.379 kb on - strand, within DZA65_RS03735 at 789.379 kb on - strand, within DZA65_RS03735 at 789.379 kb on - strand, within DZA65_RS03735 at 789.469 kb on + strand, within DZA65_RS03735 at 789.471 kb on + strand, within DZA65_RS03735 at 789.471 kb on + strand, within DZA65_RS03735 at 789.472 kb on - strand, within DZA65_RS03735 at 789.472 kb on - strand, within DZA65_RS03735 at 789.472 kb on - strand, within DZA65_RS03735 at 789.518 kb on + strand, within DZA65_RS03735 at 789.518 kb on + strand, within DZA65_RS03735 at 789.518 kb on + strand, within DZA65_RS03735 at 789.519 kb on - strand, within DZA65_RS03735 at 789.519 kb on - strand, within DZA65_RS03735 at 789.519 kb on - strand, within DZA65_RS03735 at 789.519 kb on - strand, within DZA65_RS03735 at 789.659 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.715 kb on - strand, within DZA65_RS03735 at 789.715 kb on - strand, within DZA65_RS03735 at 789.728 kb on - strand, within DZA65_RS03735 at 789.774 kb on + strand, within DZA65_RS03735 at 789.774 kb on + strand, within DZA65_RS03735 at 789.775 kb on - strand, within DZA65_RS03735 at 789.775 kb on - strand at 789.775 kb on - strand, within DZA65_RS03735 at 789.775 kb on - strand, within DZA65_RS03735 at 789.775 kb on - strand, within DZA65_RS03735 at 789.775 kb on - strand, within DZA65_RS03735 at 789.878 kb on + strand at 789.878 kb on + strand at 789.879 kb on - strand at 789.975 kb on + strand at 789.975 kb on + strand at 789.975 kb on + strand at 789.975 kb on + strand at 789.975 kb on + strand at 789.975 kb on + strand at 789.975 kb on + strand at 789.976 kb on - strand at 789.976 kb on - strand at 789.976 kb on - strand at 789.976 kb on - strand at 789.976 kb on - strand at 789.976 kb on - strand at 790.076 kb on + strand, within DZA65_RS03740 at 790.077 kb on - strand, within DZA65_RS03740 at 790.096 kb on + strand, within DZA65_RS03740 at 790.096 kb on + strand, within DZA65_RS03740 at 790.096 kb on + strand, within DZA65_RS03740 at 790.096 kb on + strand, within DZA65_RS03740 at 790.096 kb on + strand, within DZA65_RS03740 at 790.096 kb on + strand, within DZA65_RS03740 at 790.097 kb on - strand, within DZA65_RS03740 at 790.097 kb on - strand, within DZA65_RS03740 at 790.097 kb on - strand, within DZA65_RS03740 at 790.097 kb on - strand, within DZA65_RS03740 at 790.231 kb on + strand, within DZA65_RS03740 at 790.231 kb on + strand at 790.232 kb on - strand, within DZA65_RS03740 at 790.232 kb on - strand, within DZA65_RS03740 at 790.268 kb on + strand, within DZA65_RS03740 at 790.274 kb on - strand, within DZA65_RS03740 at 790.485 kb on + strand, within DZA65_RS03740 at 790.485 kb on + strand, within DZA65_RS03740 at 790.485 kb on + strand, within DZA65_RS03740 at 790.485 kb on + strand, within DZA65_RS03740 at 790.485 kb on + strand, within DZA65_RS03740 at 790.485 kb on + strand, within DZA65_RS03740 at 790.485 kb on + strand, within DZA65_RS03740 at 790.486 kb on - strand, within DZA65_RS03740 at 790.486 kb on - strand, within DZA65_RS03740 at 790.486 kb on - strand, within DZA65_RS03740 at 790.486 kb on - strand, within DZA65_RS03740 at 790.486 kb on - strand, within DZA65_RS03740 at 790.486 kb on - strand, within DZA65_RS03740 at 790.533 kb on - strand, within DZA65_RS03740 at 790.552 kb on - strand, within DZA65_RS03740 at 790.588 kb on + strand, within DZA65_RS03740 at 790.588 kb on + strand, within DZA65_RS03740 at 790.588 kb on + strand, within DZA65_RS03740 at 790.614 kb on + strand at 790.615 kb on - strand at 790.616 kb on + strand at 790.616 kb on + strand at 790.616 kb on + strand at 790.616 kb on + strand at 790.617 kb on - strand at 790.617 kb on - strand at 790.617 kb on - strand at 790.648 kb on - strand at 790.648 kb on - strand at 790.648 kb on - strand at 790.648 kb on - strand at 790.683 kb on + strand at 790.683 kb on + strand at 790.683 kb on + strand at 790.684 kb on - strand at 790.684 kb on - strand at 790.684 kb on - strand at 790.684 kb on - strand at 790.684 kb on - strand at 790.684 kb on - strand at 790.698 kb on + strand at 790.712 kb on + strand at 790.713 kb on - strand at 790.713 kb on - strand at 790.841 kb on + strand at 790.841 kb on + strand at 790.841 kb on + strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.845 kb on + strand at 790.846 kb on - strand at 790.846 kb on - strand at 790.846 kb on - strand at 790.852 kb on + strand at 790.853 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 788,067 + -0.9 788,067 + +0.1 788,067 + -0.1 788,067 + -0.5 788,067 + -0.2 788,067 + -0.5 788,068 - -0.2 788,095 + -2.5 788,095 + +0.1 788,095 + +0.3 788,095 + -0.3 788,096 - +1.1 788,096 - -0.5 788,096 - +0.0 788,374 + DZA65_RS03730 0.31 +0.1 788,375 - DZA65_RS03730 0.31 +0.1 788,387 + DZA65_RS03730 0.32 -0.9 788,388 - DZA65_RS03730 0.32 +0.3 788,388 - DZA65_RS03730 0.32 +1.5 788,388 - DZA65_RS03730 0.32 -0.0 788,408 + DZA65_RS03730 0.34 -0.5 788,408 + DZA65_RS03730 0.34 +0.2 788,408 + DZA65_RS03730 0.34 +1.2 788,408 + DZA65_RS03730 0.34 -1.7 788,408 + DZA65_RS03730 0.34 -1.6 788,408 + DZA65_RS03730 0.34 +1.1 788,408 + DZA65_RS03730 0.34 -1.1 788,408 + DZA65_RS03730 0.34 -1.3 788,408 + DZA65_RS03730 0.34 +0.9 788,408 + DZA65_RS03730 0.34 +1.0 788,408 + DZA65_RS03730 0.34 +0.8 788,408 + DZA65_RS03730 0.34 -1.2 788,409 - DZA65_RS03730 0.35 -0.9 788,409 - DZA65_RS03730 0.35 -0.2 788,409 - DZA65_RS03730 0.35 -1.2 788,409 - DZA65_RS03730 0.35 +1.1 788,411 - DZA65_RS03730 0.35 -0.3 788,475 - DZA65_RS03730 0.42 -0.3 788,477 + DZA65_RS03730 0.42 +0.1 788,477 + DZA65_RS03730 0.42 -0.2 788,477 + DZA65_RS03730 0.42 +0.1 788,478 - DZA65_RS03730 0.42 +0.1 788,478 - DZA65_RS03730 0.42 -2.1 788,519 - DZA65_RS03730 0.47 -1.2 788,592 + DZA65_RS03730 0.55 +0.6 788,592 + DZA65_RS03730 0.55 +0.5 788,592 + DZA65_RS03730 0.55 -0.7 788,592 + DZA65_RS03730 0.55 -0.5 788,592 + DZA65_RS03730 0.55 +0.1 788,592 + DZA65_RS03730 0.55 +0.9 788,592 + DZA65_RS03730 0.55 -1.5 788,592 + DZA65_RS03730 0.55 +1.1 788,592 + DZA65_RS03730 0.55 -0.3 788,592 + DZA65_RS03730 0.55 +0.0 788,592 + DZA65_RS03730 0.55 -0.0 788,592 + DZA65_RS03730 0.55 -0.9 788,592 + DZA65_RS03730 0.55 -1.0 788,593 - DZA65_RS03730 0.55 +0.1 788,593 - DZA65_RS03730 0.55 -0.3 788,593 - DZA65_RS03730 0.55 -0.1 788,593 - DZA65_RS03730 0.55 -0.6 788,593 - DZA65_RS03730 0.55 +0.9 788,593 - DZA65_RS03730 0.55 +0.6 788,593 - DZA65_RS03730 0.55 -0.7 788,593 - DZA65_RS03730 0.55 +1.0 788,593 - DZA65_RS03730 0.55 -0.3 788,593 - DZA65_RS03730 0.55 -0.6 788,606 - DZA65_RS03730 0.56 +0.0 788,606 - DZA65_RS03730 0.56 -1.2 788,606 - DZA65_RS03730 0.56 -0.2 788,694 + DZA65_RS03730 0.66 -1.1 788,694 + DZA65_RS03730 0.66 +0.4 788,695 - DZA65_RS03730 0.66 +0.1 788,695 - DZA65_RS03730 0.66 -0.8 788,695 - DZA65_RS03730 0.66 +0.6 788,695 - DZA65_RS03730 0.66 -0.4 788,762 - DZA65_RS03730 0.74 +0.1 788,882 + DZA65_RS03730 0.87 -0.5 788,882 + DZA65_RS03730 0.87 -0.7 788,882 + DZA65_RS03730 0.87 +0.3 788,882 + DZA65_RS03730 0.87 -1.5 788,882 + DZA65_RS03730 0.87 -0.5 788,883 - DZA65_RS03730 0.87 -1.1 788,883 - DZA65_RS03730 0.87 -0.4 788,883 - DZA65_RS03730 0.87 -0.3 788,883 - DZA65_RS03730 0.87 -0.1 788,883 - DZA65_RS03730 0.87 +0.5 788,883 - DZA65_RS03730 0.87 +1.0 788,883 - DZA65_RS03730 0.87 -1.2 788,970 + -0.4 788,999 + +1.7 789,000 - -0.3 789,000 - +1.1 789,000 - +0.7 789,000 - -0.7 789,007 + -1.1 789,007 + +0.6 789,007 + -0.0 789,007 + -1.9 789,008 - -0.4 789,008 - +0.4 789,008 - +0.6 789,008 - +0.9 789,008 - -0.1 789,008 - +0.2 789,008 - +0.5 789,008 - -0.9 789,008 - -0.7 789,173 + DZA65_RS03735 0.20 -1.5 789,243 - DZA65_RS03735 0.28 +0.0 789,330 + DZA65_RS03735 0.38 +0.3 789,330 + DZA65_RS03735 0.38 -0.9 789,330 + +1.1 789,331 - DZA65_RS03735 0.38 +0.2 789,378 + DZA65_RS03735 0.44 +1.1 789,378 + DZA65_RS03735 0.44 +0.2 789,378 + DZA65_RS03735 0.44 +0.5 789,378 + DZA65_RS03735 0.44 -0.8 789,379 - DZA65_RS03735 0.44 -0.8 789,379 - DZA65_RS03735 0.44 -0.0 789,379 - DZA65_RS03735 0.44 -1.5 789,469 + DZA65_RS03735 0.54 -1.4 789,471 + DZA65_RS03735 0.54 -0.6 789,471 + DZA65_RS03735 0.54 -0.4 789,472 - DZA65_RS03735 0.55 -1.6 789,472 - DZA65_RS03735 0.55 -0.2 789,472 - DZA65_RS03735 0.55 -0.1 789,518 + DZA65_RS03735 0.60 -0.4 789,518 + DZA65_RS03735 0.60 -0.7 789,518 + DZA65_RS03735 0.60 -1.2 789,519 - DZA65_RS03735 0.60 +0.9 789,519 - DZA65_RS03735 0.60 +0.7 789,519 - DZA65_RS03735 0.60 -0.1 789,519 - DZA65_RS03735 0.60 +1.9 789,659 + DZA65_RS03735 0.76 -0.6 789,714 + DZA65_RS03735 0.82 -0.2 789,714 + DZA65_RS03735 0.82 -1.6 789,714 + DZA65_RS03735 0.82 -0.1 789,714 + DZA65_RS03735 0.82 -0.2 789,714 + DZA65_RS03735 0.82 +0.7 789,714 + DZA65_RS03735 0.82 -0.8 789,714 + DZA65_RS03735 0.82 -0.7 789,714 + DZA65_RS03735 0.82 +1.1 789,715 - DZA65_RS03735 0.82 -1.2 789,715 - DZA65_RS03735 0.82 -0.8 789,728 - DZA65_RS03735 0.84 -0.0 789,774 + DZA65_RS03735 0.89 -0.1 789,774 + DZA65_RS03735 0.89 -0.3 789,775 - DZA65_RS03735 0.89 +0.6 789,775 - -0.5 789,775 - DZA65_RS03735 0.89 -0.1 789,775 - DZA65_RS03735 0.89 +2.1 789,775 - DZA65_RS03735 0.89 -0.8 789,775 - DZA65_RS03735 0.89 +0.7 789,878 + -2.0 789,878 + +0.7 789,879 - +0.7 789,975 + +0.3 789,975 + -2.1 789,975 + -0.2 789,975 + +0.9 789,975 + +0.4 789,975 + -0.2 789,975 + -0.8 789,976 - -0.1 789,976 - -1.9 789,976 - +0.7 789,976 - +0.1 789,976 - -1.2 789,976 - +0.2 790,076 + DZA65_RS03740 0.21 +0.3 790,077 - DZA65_RS03740 0.21 -0.3 790,096 + DZA65_RS03740 0.24 -0.2 790,096 + DZA65_RS03740 0.24 -1.5 790,096 + DZA65_RS03740 0.24 -0.7 790,096 + DZA65_RS03740 0.24 -0.3 790,096 + DZA65_RS03740 0.24 +0.9 790,096 + DZA65_RS03740 0.24 -0.8 790,097 - DZA65_RS03740 0.24 +0.2 790,097 - DZA65_RS03740 0.24 -0.1 790,097 - DZA65_RS03740 0.24 -0.2 790,097 - DZA65_RS03740 0.24 -1.8 790,231 + DZA65_RS03740 0.41 +1.0 790,231 + +0.1 790,232 - DZA65_RS03740 0.41 -0.4 790,232 - DZA65_RS03740 0.41 +0.5 790,268 + DZA65_RS03740 0.46 -0.5 790,274 - DZA65_RS03740 0.47 -0.6 790,485 + DZA65_RS03740 0.74 +0.8 790,485 + DZA65_RS03740 0.74 -0.6 790,485 + DZA65_RS03740 0.74 -0.4 790,485 + DZA65_RS03740 0.74 +1.4 790,485 + DZA65_RS03740 0.74 +1.2 790,485 + DZA65_RS03740 0.74 -0.6 790,485 + DZA65_RS03740 0.74 +0.2 790,486 - DZA65_RS03740 0.74 +0.2 790,486 - DZA65_RS03740 0.74 -1.2 790,486 - DZA65_RS03740 0.74 -0.1 790,486 - DZA65_RS03740 0.74 -0.0 790,486 - DZA65_RS03740 0.74 +1.6 790,486 - DZA65_RS03740 0.74 -2.0 790,533 - DZA65_RS03740 0.80 +0.1 790,552 - DZA65_RS03740 0.83 +0.4 790,588 + DZA65_RS03740 0.87 +0.0 790,588 + DZA65_RS03740 0.87 -0.7 790,588 + DZA65_RS03740 0.87 +0.3 790,614 + -0.7 790,615 - +0.2 790,616 + -0.7 790,616 + -1.1 790,616 + -1.8 790,616 + -0.6 790,617 - -0.2 790,617 - -0.9 790,617 - +0.5 790,648 - +0.9 790,648 - -0.1 790,648 - -0.1 790,648 - +0.2 790,683 + -0.0 790,683 + -0.7 790,683 + +0.7 790,684 - -0.3 790,684 - +0.8 790,684 - -0.0 790,684 - +0.2 790,684 - +0.5 790,684 - +0.6 790,698 + -0.3 790,712 + -0.5 790,713 - +0.5 790,713 - -0.1 790,841 + +1.0 790,841 + -0.1 790,841 + -0.3 790,842 - -0.1 790,842 - -0.5 790,842 - +0.4 790,842 - -0.1 790,842 - +0.1 790,842 - +1.7 790,842 - -0.9 790,842 - -0.7 790,842 - +0.6 790,842 - -1.6 790,842 - -0.1 790,845 + -0.2 790,846 - +0.7 790,846 - +0.9 790,846 - -0.5 790,852 + -0.6 790,853 - +2.1
Or see this region's nucleotide sequence