Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02415 and DZA65_RS02420 overlap by 4 nucleotides DZA65_RS02420 and DZA65_RS02425 are separated by 76 nucleotides DZA65_RS02425 and DZA65_RS02430 overlap by 23 nucleotides
DZA65_RS02415: DZA65_RS02415 - ABC transporter ATP-binding protein, at 520,363 to 522,063
_RS02415
DZA65_RS02420: DZA65_RS02420 - ABC transporter permease, at 522,060 to 522,899
_RS02420
DZA65_RS02425: DZA65_RS02425 - ABC transporter permease, at 522,976 to 523,941
_RS02425
DZA65_RS02430: DZA65_RS02430 - ABC transporter substrate-binding protein, at 523,919 to 525,547
_RS02430
Position (kb) 522
523
524 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 522.012 kb on + strand at 522.012 kb on + strand at 522.013 kb on - strand at 522.019 kb on + strand at 522.034 kb on + strand at 522.034 kb on + strand at 522.035 kb on - strand at 522.035 kb on - strand at 522.035 kb on - strand at 522.038 kb on - strand at 522.090 kb on + strand at 522.090 kb on + strand at 522.090 kb on + strand at 522.090 kb on + strand at 522.090 kb on + strand at 522.090 kb on + strand at 522.090 kb on + strand at 522.091 kb on - strand at 522.091 kb on - strand at 522.091 kb on - strand at 522.091 kb on - strand at 522.329 kb on + strand, within DZA65_RS02420 at 522.330 kb on - strand, within DZA65_RS02420 at 522.330 kb on - strand, within DZA65_RS02420 at 522.346 kb on + strand, within DZA65_RS02420 at 522.346 kb on + strand, within DZA65_RS02420 at 522.346 kb on + strand, within DZA65_RS02420 at 522.346 kb on + strand, within DZA65_RS02420 at 522.346 kb on + strand, within DZA65_RS02420 at 522.346 kb on + strand, within DZA65_RS02420 at 522.347 kb on - strand, within DZA65_RS02420 at 522.347 kb on - strand, within DZA65_RS02420 at 522.347 kb on - strand, within DZA65_RS02420 at 522.347 kb on - strand, within DZA65_RS02420 at 522.347 kb on - strand, within DZA65_RS02420 at 522.347 kb on - strand, within DZA65_RS02420 at 522.470 kb on + strand, within DZA65_RS02420 at 522.470 kb on + strand, within DZA65_RS02420 at 522.470 kb on + strand, within DZA65_RS02420 at 522.556 kb on - strand, within DZA65_RS02420 at 522.673 kb on + strand, within DZA65_RS02420 at 522.673 kb on + strand, within DZA65_RS02420 at 522.674 kb on - strand, within DZA65_RS02420 at 522.674 kb on - strand, within DZA65_RS02420 at 522.675 kb on + strand, within DZA65_RS02420 at 522.676 kb on - strand, within DZA65_RS02420 at 522.676 kb on - strand, within DZA65_RS02420 at 522.825 kb on + strand at 522.826 kb on - strand at 522.870 kb on - strand at 522.874 kb on + strand at 522.875 kb on - strand at 522.893 kb on + strand at 522.894 kb on - strand at 522.917 kb on + strand at 522.917 kb on + strand at 522.917 kb on + strand at 522.918 kb on - strand at 522.918 kb on - strand at 522.918 kb on - strand at 522.918 kb on - strand at 522.925 kb on - strand at 522.933 kb on - strand at 522.939 kb on + strand at 522.939 kb on + strand at 522.939 kb on + strand at 522.939 kb on + strand at 522.940 kb on - strand at 522.940 kb on - strand at 522.940 kb on - strand at 522.940 kb on - strand at 522.948 kb on - strand at 522.949 kb on + strand at 522.949 kb on + strand at 522.949 kb on + strand at 522.949 kb on + strand at 522.949 kb on + strand at 522.949 kb on + strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.954 kb on + strand at 522.954 kb on + strand at 522.955 kb on - strand at 522.963 kb on - strand at 522.963 kb on - strand at 522.964 kb on + strand at 522.964 kb on + strand at 522.964 kb on + strand at 522.964 kb on + strand at 522.964 kb on + strand at 522.964 kb on + strand at 522.964 kb on + strand at 522.965 kb on - strand at 522.965 kb on - strand at 522.965 kb on - strand at 522.965 kb on - strand at 522.965 kb on - strand at 522.965 kb on - strand at 522.965 kb on - strand at 522.965 kb on - strand at 522.965 kb on - strand at 523.028 kb on + strand at 523.028 kb on + strand at 523.028 kb on + strand at 523.028 kb on + strand at 523.029 kb on - strand at 523.029 kb on - strand at 523.029 kb on - strand at 523.029 kb on - strand at 523.465 kb on + strand, within DZA65_RS02425 at 523.466 kb on - strand, within DZA65_RS02425 at 523.481 kb on + strand, within DZA65_RS02425 at 523.482 kb on - strand, within DZA65_RS02425 at 523.670 kb on + strand, within DZA65_RS02425 at 523.718 kb on + strand, within DZA65_RS02425 at 523.719 kb on - strand, within DZA65_RS02425 at 523.719 kb on - strand, within DZA65_RS02425 at 523.921 kb on - strand at 523.927 kb on + strand at 523.941 kb on + strand at 523.941 kb on + strand at 523.941 kb on + strand at 523.941 kb on + strand at 523.941 kb on + strand at 523.942 kb on - strand at 523.942 kb on - strand at 523.942 kb on - strand at 523.942 kb on - strand at 523.942 kb on - strand at 523.942 kb on - strand at 523.942 kb on - strand at 523.942 kb on - strand at 523.942 kb on - strand at 523.942 kb on - strand at 523.942 kb on - strand at 523.982 kb on + strand at 523.982 kb on + strand at 523.982 kb on + strand at 523.983 kb on - strand at 523.983 kb on - strand at 524.034 kb on + strand at 524.034 kb on + strand at 524.034 kb on + strand at 524.034 kb on + strand at 524.035 kb on - strand at 524.035 kb on - strand at 524.070 kb on + strand at 524.070 kb on + strand at 524.070 kb on + strand at 524.070 kb on + strand at 524.071 kb on - strand at 524.071 kb on - strand at 524.169 kb on + strand, within DZA65_RS02430 at 524.169 kb on + strand, within DZA65_RS02430 at 524.169 kb on + strand, within DZA65_RS02430 at 524.169 kb on + strand, within DZA65_RS02430 at 524.169 kb on + strand, within DZA65_RS02430 at 524.169 kb on + strand, within DZA65_RS02430 at 524.169 kb on + strand, within DZA65_RS02430 at 524.169 kb on + strand, within DZA65_RS02430 at 524.169 kb on + strand, within DZA65_RS02430 at 524.169 kb on + strand, within DZA65_RS02430 at 524.169 kb on + strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.188 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.221 kb on - strand, within DZA65_RS02430 at 524.221 kb on - strand, within DZA65_RS02430 at 524.221 kb on - strand, within DZA65_RS02430 at 524.239 kb on - strand, within DZA65_RS02430 at 524.239 kb on - strand, within DZA65_RS02430 at 524.287 kb on + strand, within DZA65_RS02430 at 524.288 kb on - strand, within DZA65_RS02430 at 524.288 kb on - strand, within DZA65_RS02430 at 524.288 kb on - strand, within DZA65_RS02430 at 524.322 kb on + strand, within DZA65_RS02430 at 524.323 kb on - strand, within DZA65_RS02430 at 524.376 kb on + strand, within DZA65_RS02430 at 524.376 kb on + strand, within DZA65_RS02430 at 524.377 kb on - strand, within DZA65_RS02430 at 524.514 kb on + strand, within DZA65_RS02430 at 524.514 kb on + strand, within DZA65_RS02430 at 524.514 kb on + strand, within DZA65_RS02430 at 524.515 kb on - strand, within DZA65_RS02430 at 524.517 kb on + strand, within DZA65_RS02430 at 524.517 kb on + strand, within DZA65_RS02430 at 524.517 kb on + strand, within DZA65_RS02430 at 524.517 kb on + strand, within DZA65_RS02430 at 524.518 kb on - strand, within DZA65_RS02430 at 524.518 kb on - strand, within DZA65_RS02430 at 524.518 kb on - strand, within DZA65_RS02430 at 524.518 kb on - strand, within DZA65_RS02430 at 524.518 kb on - strand, within DZA65_RS02430 at 524.518 kb on - strand, within DZA65_RS02430 at 524.653 kb on + strand, within DZA65_RS02430 at 524.653 kb on + strand, within DZA65_RS02430 at 524.653 kb on + strand, within DZA65_RS02430 at 524.653 kb on + strand, within DZA65_RS02430 at 524.653 kb on + strand, within DZA65_RS02430 at 524.653 kb on + strand, within DZA65_RS02430 at 524.653 kb on + strand, within DZA65_RS02430 at 524.654 kb on - strand, within DZA65_RS02430 at 524.654 kb on - strand, within DZA65_RS02430 at 524.661 kb on + strand at 524.695 kb on + strand, within DZA65_RS02430 at 524.695 kb on + strand, within DZA65_RS02430 at 524.699 kb on + strand, within DZA65_RS02430 at 524.699 kb on + strand, within DZA65_RS02430 at 524.699 kb on + strand, within DZA65_RS02430 at 524.699 kb on + strand, within DZA65_RS02430 at 524.699 kb on + strand, within DZA65_RS02430 at 524.700 kb on - strand, within DZA65_RS02430 at 524.700 kb on - strand, within DZA65_RS02430 at 524.700 kb on - strand, within DZA65_RS02430 at 524.700 kb on - strand, within DZA65_RS02430 at 524.700 kb on - strand, within DZA65_RS02430 at 524.700 kb on - strand, within DZA65_RS02430 at 524.765 kb on + strand, within DZA65_RS02430 at 524.765 kb on + strand, within DZA65_RS02430 at 524.765 kb on + strand, within DZA65_RS02430 at 524.766 kb on - strand, within DZA65_RS02430 at 524.766 kb on - strand, within DZA65_RS02430 at 524.814 kb on + strand, within DZA65_RS02430 at 524.814 kb on + strand, within DZA65_RS02430 at 524.815 kb on - strand, within DZA65_RS02430 at 524.815 kb on - strand, within DZA65_RS02430 at 524.815 kb on - strand, within DZA65_RS02430 at 524.838 kb on + strand, within DZA65_RS02430 at 524.839 kb on - strand, within DZA65_RS02430 at 524.839 kb on - strand, within DZA65_RS02430 at 524.862 kb on + strand, within DZA65_RS02430 at 524.880 kb on + strand, within DZA65_RS02430 at 524.881 kb on - strand, within DZA65_RS02430
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 522,012 + +0.4 522,012 + +0.1 522,013 - +0.4 522,019 + -0.0 522,034 + +0.9 522,034 + +0.6 522,035 - -0.9 522,035 - +0.1 522,035 - -2.5 522,038 - -2.1 522,090 + +0.7 522,090 + -0.1 522,090 + +1.0 522,090 + -0.5 522,090 + -0.1 522,090 + +0.3 522,090 + +0.4 522,091 - -0.2 522,091 - -0.0 522,091 - -0.3 522,091 - -1.7 522,329 + DZA65_RS02420 0.32 -1.1 522,330 - DZA65_RS02420 0.32 +0.2 522,330 - DZA65_RS02420 0.32 +0.7 522,346 + DZA65_RS02420 0.34 +0.6 522,346 + DZA65_RS02420 0.34 +0.3 522,346 + DZA65_RS02420 0.34 -0.8 522,346 + DZA65_RS02420 0.34 +0.4 522,346 + DZA65_RS02420 0.34 -1.2 522,346 + DZA65_RS02420 0.34 +0.9 522,347 - DZA65_RS02420 0.34 +0.2 522,347 - DZA65_RS02420 0.34 -1.6 522,347 - DZA65_RS02420 0.34 +0.4 522,347 - DZA65_RS02420 0.34 +1.9 522,347 - DZA65_RS02420 0.34 -0.0 522,347 - DZA65_RS02420 0.34 +0.0 522,470 + DZA65_RS02420 0.49 +0.1 522,470 + DZA65_RS02420 0.49 -2.6 522,470 + DZA65_RS02420 0.49 -0.4 522,556 - DZA65_RS02420 0.59 +0.3 522,673 + DZA65_RS02420 0.73 -0.0 522,673 + DZA65_RS02420 0.73 -0.4 522,674 - DZA65_RS02420 0.73 +0.5 522,674 - DZA65_RS02420 0.73 -0.4 522,675 + DZA65_RS02420 0.73 -0.3 522,676 - DZA65_RS02420 0.73 +0.6 522,676 - DZA65_RS02420 0.73 +1.8 522,825 + +1.4 522,826 - +0.2 522,870 - -0.6 522,874 + -1.9 522,875 - -0.4 522,893 + -0.8 522,894 - +1.5 522,917 + -0.1 522,917 + +0.5 522,917 + +3.2 522,918 - -0.6 522,918 - +0.4 522,918 - -0.6 522,918 - +0.7 522,925 - -0.5 522,933 - -0.5 522,939 + -0.6 522,939 + +0.6 522,939 + +0.7 522,939 + -0.2 522,940 - -2.6 522,940 - -0.6 522,940 - +0.5 522,940 - -1.0 522,948 - -0.0 522,949 + +0.2 522,949 + +0.4 522,949 + +0.0 522,949 + +0.6 522,949 + -0.0 522,949 + -0.6 522,950 - -0.2 522,950 - -1.2 522,950 - -0.7 522,950 - -0.7 522,950 - +1.2 522,950 - +0.9 522,950 - +0.3 522,950 - +0.7 522,950 - -0.7 522,950 - -0.1 522,954 + -1.1 522,954 + -0.0 522,955 - +1.2 522,963 - -0.8 522,963 - -0.9 522,964 + -1.7 522,964 + -0.1 522,964 + +0.8 522,964 + -2.4 522,964 + -1.9 522,964 + -0.1 522,964 + -0.2 522,965 - +0.1 522,965 - +1.1 522,965 - +0.4 522,965 - -1.4 522,965 - +1.1 522,965 - +0.1 522,965 - -0.7 522,965 - +3.0 522,965 - +0.3 523,028 + +0.6 523,028 + +0.0 523,028 + -0.0 523,028 + +0.9 523,029 - +0.1 523,029 - -0.9 523,029 - -0.4 523,029 - -0.1 523,465 + DZA65_RS02425 0.51 -0.6 523,466 - DZA65_RS02425 0.51 +0.2 523,481 + DZA65_RS02425 0.52 -0.6 523,482 - DZA65_RS02425 0.52 -2.6 523,670 + DZA65_RS02425 0.72 +1.0 523,718 + DZA65_RS02425 0.77 -0.4 523,719 - DZA65_RS02425 0.77 -0.0 523,719 - DZA65_RS02425 0.77 -1.4 523,921 - -0.8 523,927 + +0.1 523,941 + -0.4 523,941 + -0.4 523,941 + -1.0 523,941 + +0.1 523,941 + -0.2 523,942 - +0.2 523,942 - -0.3 523,942 - -1.1 523,942 - -1.2 523,942 - +0.4 523,942 - +1.0 523,942 - -0.6 523,942 - +0.7 523,942 - -0.7 523,942 - -0.1 523,942 - -0.9 523,982 + -1.4 523,982 + -0.2 523,982 + +0.2 523,983 - -0.5 523,983 - -0.1 524,034 + -1.6 524,034 + +0.2 524,034 + +0.2 524,034 + +0.2 524,035 - -0.3 524,035 - -0.3 524,070 + -1.9 524,070 + +0.2 524,070 + -0.2 524,070 + +1.2 524,071 - +0.0 524,071 - -2.2 524,169 + DZA65_RS02430 0.15 +0.7 524,169 + DZA65_RS02430 0.15 -0.6 524,169 + DZA65_RS02430 0.15 -0.1 524,169 + DZA65_RS02430 0.15 -0.3 524,169 + DZA65_RS02430 0.15 -0.5 524,169 + DZA65_RS02430 0.15 -0.4 524,169 + DZA65_RS02430 0.15 +0.9 524,169 + DZA65_RS02430 0.15 -0.5 524,169 + DZA65_RS02430 0.15 +1.0 524,169 + DZA65_RS02430 0.15 +0.4 524,169 + DZA65_RS02430 0.15 -0.9 524,170 - DZA65_RS02430 0.15 -0.9 524,170 - DZA65_RS02430 0.15 -0.2 524,170 - DZA65_RS02430 0.15 -0.4 524,170 - DZA65_RS02430 0.15 -0.2 524,170 - DZA65_RS02430 0.15 +0.1 524,170 - DZA65_RS02430 0.15 -0.1 524,170 - DZA65_RS02430 0.15 +1.6 524,170 - DZA65_RS02430 0.15 +0.4 524,170 - DZA65_RS02430 0.15 +1.2 524,170 - DZA65_RS02430 0.15 -2.5 524,170 - DZA65_RS02430 0.15 -0.4 524,170 - +2.0 524,170 - DZA65_RS02430 0.15 -1.5 524,170 - DZA65_RS02430 0.15 +1.0 524,170 - DZA65_RS02430 0.15 +2.0 524,170 - DZA65_RS02430 0.15 +0.2 524,188 + DZA65_RS02430 0.17 +0.2 524,220 + DZA65_RS02430 0.18 -1.6 524,220 + DZA65_RS02430 0.18 +1.0 524,220 + DZA65_RS02430 0.18 -0.2 524,220 + DZA65_RS02430 0.18 -0.1 524,220 + DZA65_RS02430 0.18 +1.2 524,220 + DZA65_RS02430 0.18 +0.1 524,220 + DZA65_RS02430 0.18 -1.1 524,220 + DZA65_RS02430 0.18 +1.8 524,220 + DZA65_RS02430 0.18 -0.7 524,220 + DZA65_RS02430 0.18 -0.8 524,220 + DZA65_RS02430 0.18 +0.4 524,221 - DZA65_RS02430 0.19 -1.8 524,221 - DZA65_RS02430 0.19 -0.1 524,221 - DZA65_RS02430 0.19 -0.5 524,239 - DZA65_RS02430 0.20 -0.4 524,239 - DZA65_RS02430 0.20 -1.4 524,287 + DZA65_RS02430 0.23 -0.1 524,288 - DZA65_RS02430 0.23 +0.1 524,288 - DZA65_RS02430 0.23 -1.6 524,288 - DZA65_RS02430 0.23 -0.8 524,322 + DZA65_RS02430 0.25 -0.4 524,323 - DZA65_RS02430 0.25 -0.1 524,376 + DZA65_RS02430 0.28 +0.8 524,376 + DZA65_RS02430 0.28 +1.0 524,377 - DZA65_RS02430 0.28 -0.5 524,514 + DZA65_RS02430 0.37 +0.4 524,514 + DZA65_RS02430 0.37 -1.0 524,514 + DZA65_RS02430 0.37 -0.7 524,515 - DZA65_RS02430 0.37 +0.0 524,517 + DZA65_RS02430 0.37 -1.9 524,517 + DZA65_RS02430 0.37 +0.3 524,517 + DZA65_RS02430 0.37 -0.4 524,517 + DZA65_RS02430 0.37 -0.4 524,518 - DZA65_RS02430 0.37 +0.1 524,518 - DZA65_RS02430 0.37 +0.2 524,518 - DZA65_RS02430 0.37 +0.9 524,518 - DZA65_RS02430 0.37 +0.4 524,518 - DZA65_RS02430 0.37 +0.1 524,518 - DZA65_RS02430 0.37 -0.6 524,653 + DZA65_RS02430 0.45 +0.5 524,653 + DZA65_RS02430 0.45 -0.5 524,653 + DZA65_RS02430 0.45 -0.9 524,653 + DZA65_RS02430 0.45 +0.9 524,653 + DZA65_RS02430 0.45 +0.4 524,653 + DZA65_RS02430 0.45 +0.5 524,653 + DZA65_RS02430 0.45 -0.1 524,654 - DZA65_RS02430 0.45 -0.5 524,654 - DZA65_RS02430 0.45 -0.7 524,661 + +1.6 524,695 + DZA65_RS02430 0.48 -0.2 524,695 + DZA65_RS02430 0.48 -1.0 524,699 + DZA65_RS02430 0.48 +0.2 524,699 + DZA65_RS02430 0.48 +0.1 524,699 + DZA65_RS02430 0.48 -0.6 524,699 + DZA65_RS02430 0.48 -0.2 524,699 + DZA65_RS02430 0.48 -0.5 524,700 - DZA65_RS02430 0.48 -0.4 524,700 - DZA65_RS02430 0.48 +0.9 524,700 - DZA65_RS02430 0.48 -0.8 524,700 - DZA65_RS02430 0.48 +0.4 524,700 - DZA65_RS02430 0.48 -1.6 524,700 - DZA65_RS02430 0.48 +0.1 524,765 + DZA65_RS02430 0.52 -1.0 524,765 + DZA65_RS02430 0.52 +0.3 524,765 + DZA65_RS02430 0.52 -0.6 524,766 - DZA65_RS02430 0.52 -0.6 524,766 - DZA65_RS02430 0.52 +0.1 524,814 + DZA65_RS02430 0.55 +1.0 524,814 + DZA65_RS02430 0.55 +0.1 524,815 - DZA65_RS02430 0.55 -0.2 524,815 - DZA65_RS02430 0.55 +1.1 524,815 - DZA65_RS02430 0.55 +0.6 524,838 + DZA65_RS02430 0.56 -0.4 524,839 - DZA65_RS02430 0.56 +0.2 524,839 - DZA65_RS02430 0.56 -1.4 524,862 + DZA65_RS02430 0.58 -0.2 524,880 + DZA65_RS02430 0.59 +0.3 524,881 - DZA65_RS02430 0.59 -0.0
Or see this region's nucleotide sequence