Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02370 and DZA65_RS02375 are separated by 408 nucleotides DZA65_RS02375 and DZA65_RS02380 are separated by 132 nucleotides
DZA65_RS02370: DZA65_RS02370 - MFS transporter, at 510,954 to 512,186
_RS02370
DZA65_RS02375: DZA65_RS02375 - HD domain-containing protein, at 512,595 to 513,305
_RS02375
DZA65_RS02380: DZA65_RS02380 - IclR family transcriptional regulator, at 513,438 to 514,244
_RS02380
Position (kb) 512
513
514 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 511.663 kb on + strand, within DZA65_RS02370 at 511.678 kb on - strand, within DZA65_RS02370 at 511.678 kb on - strand, within DZA65_RS02370 at 511.681 kb on + strand, within DZA65_RS02370 at 511.681 kb on + strand, within DZA65_RS02370 at 511.682 kb on - strand, within DZA65_RS02370 at 511.682 kb on - strand, within DZA65_RS02370 at 511.682 kb on - strand, within DZA65_RS02370 at 511.682 kb on - strand, within DZA65_RS02370 at 511.682 kb on - strand, within DZA65_RS02370 at 511.699 kb on + strand, within DZA65_RS02370 at 511.699 kb on + strand, within DZA65_RS02370 at 511.699 kb on + strand, within DZA65_RS02370 at 511.699 kb on + strand, within DZA65_RS02370 at 511.699 kb on + strand, within DZA65_RS02370 at 511.699 kb on + strand, within DZA65_RS02370 at 511.700 kb on - strand, within DZA65_RS02370 at 511.700 kb on - strand, within DZA65_RS02370 at 511.700 kb on - strand, within DZA65_RS02370 at 511.700 kb on - strand, within DZA65_RS02370 at 511.700 kb on - strand, within DZA65_RS02370 at 511.700 kb on - strand, within DZA65_RS02370 at 511.726 kb on + strand, within DZA65_RS02370 at 511.726 kb on + strand, within DZA65_RS02370 at 511.726 kb on + strand, within DZA65_RS02370 at 511.726 kb on + strand, within DZA65_RS02370 at 511.727 kb on - strand, within DZA65_RS02370 at 511.727 kb on - strand, within DZA65_RS02370 at 511.727 kb on - strand, within DZA65_RS02370 at 511.727 kb on - strand, within DZA65_RS02370 at 511.727 kb on - strand, within DZA65_RS02370 at 511.905 kb on + strand, within DZA65_RS02370 at 511.906 kb on - strand, within DZA65_RS02370 at 511.906 kb on - strand, within DZA65_RS02370 at 511.982 kb on + strand, within DZA65_RS02370 at 512.042 kb on + strand, within DZA65_RS02370 at 512.042 kb on + strand, within DZA65_RS02370 at 512.058 kb on + strand, within DZA65_RS02370 at 512.059 kb on - strand, within DZA65_RS02370 at 512.065 kb on + strand at 512.065 kb on + strand at 512.066 kb on - strand at 512.066 kb on - strand at 512.066 kb on - strand at 512.066 kb on - strand at 512.080 kb on + strand at 512.080 kb on + strand at 512.081 kb on - strand at 512.081 kb on - strand at 512.081 kb on - strand at 512.104 kb on + strand at 512.104 kb on + strand at 512.105 kb on - strand at 512.191 kb on + strand at 512.191 kb on + strand at 512.192 kb on - strand at 512.192 kb on - strand at 512.195 kb on + strand at 512.195 kb on + strand at 512.195 kb on + strand at 512.195 kb on + strand at 512.196 kb on - strand at 512.222 kb on + strand at 512.228 kb on + strand at 512.229 kb on - strand at 512.303 kb on + strand at 512.304 kb on - strand at 512.304 kb on - strand at 512.304 kb on - strand at 512.317 kb on - strand at 512.320 kb on + strand at 512.321 kb on + strand at 512.322 kb on - strand at 512.394 kb on + strand at 512.395 kb on - strand at 512.395 kb on - strand at 512.395 kb on - strand at 512.406 kb on + strand at 512.407 kb on - strand at 512.408 kb on + strand at 512.408 kb on + strand at 512.408 kb on + strand at 512.412 kb on - strand at 512.412 kb on - strand at 512.492 kb on + strand at 512.493 kb on - strand at 512.507 kb on + strand at 512.551 kb on - strand at 512.551 kb on - strand at 512.554 kb on + strand at 512.554 kb on + strand at 512.555 kb on - strand at 512.555 kb on - strand at 512.555 kb on - strand at 512.569 kb on + strand at 512.569 kb on + strand at 512.569 kb on + strand at 512.569 kb on + strand at 512.569 kb on + strand at 512.569 kb on + strand at 512.569 kb on + strand at 512.569 kb on + strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.602 kb on + strand at 512.602 kb on + strand at 512.624 kb on + strand at 512.625 kb on - strand at 512.625 kb on - strand at 512.631 kb on + strand at 512.631 kb on + strand at 512.631 kb on + strand at 512.631 kb on + strand at 512.632 kb on - strand at 512.632 kb on - strand at 512.632 kb on - strand at 512.632 kb on - strand at 512.632 kb on - strand at 512.636 kb on - strand at 512.636 kb on - strand at 512.636 kb on - strand at 512.884 kb on + strand, within DZA65_RS02375 at 512.884 kb on + strand, within DZA65_RS02375 at 512.884 kb on + strand at 512.884 kb on + strand, within DZA65_RS02375 at 512.884 kb on + strand, within DZA65_RS02375 at 512.884 kb on + strand, within DZA65_RS02375 at 512.884 kb on + strand, within DZA65_RS02375 at 512.885 kb on - strand, within DZA65_RS02375 at 512.885 kb on - strand, within DZA65_RS02375 at 512.933 kb on + strand, within DZA65_RS02375 at 512.936 kb on + strand, within DZA65_RS02375 at 513.021 kb on + strand, within DZA65_RS02375 at 513.021 kb on + strand, within DZA65_RS02375 at 513.021 kb on + strand, within DZA65_RS02375 at 513.022 kb on - strand, within DZA65_RS02375 at 513.022 kb on - strand at 513.022 kb on - strand, within DZA65_RS02375 at 513.022 kb on - strand, within DZA65_RS02375 at 513.022 kb on - strand, within DZA65_RS02375 at 513.102 kb on + strand, within DZA65_RS02375 at 513.102 kb on + strand, within DZA65_RS02375 at 513.103 kb on - strand, within DZA65_RS02375 at 513.167 kb on + strand, within DZA65_RS02375 at 513.350 kb on + strand at 513.350 kb on + strand at 513.350 kb on + strand at 513.350 kb on + strand at 513.350 kb on + strand at 513.350 kb on + strand at 513.351 kb on - strand at 513.351 kb on - strand at 513.351 kb on - strand at 513.351 kb on - strand at 513.359 kb on + strand at 513.360 kb on - strand at 513.360 kb on - strand at 513.360 kb on - strand at 513.360 kb on - strand at 513.360 kb on - strand at 513.360 kb on - strand at 513.383 kb on + strand at 513.383 kb on + strand at 513.383 kb on + strand at 513.384 kb on - strand at 513.384 kb on - strand at 513.384 kb on - strand at 513.384 kb on - strand at 513.384 kb on - strand at 513.384 kb on - strand at 513.384 kb on - strand at 513.384 kb on - strand at 513.399 kb on + strand at 513.464 kb on + strand at 513.464 kb on + strand at 513.464 kb on + strand at 513.464 kb on + strand at 513.465 kb on - strand at 513.465 kb on - strand at 513.465 kb on - strand at 513.465 kb on - strand at 513.514 kb on + strand at 513.515 kb on - strand at 513.515 kb on - strand at 513.515 kb on - strand at 513.517 kb on + strand at 513.517 kb on + strand at 513.517 kb on + strand at 513.517 kb on + strand at 513.517 kb on + strand at 513.517 kb on + strand at 513.517 kb on + strand at 513.517 kb on + strand at 513.518 kb on - strand at 513.518 kb on - strand at 513.518 kb on - strand at 513.518 kb on - strand at 513.518 kb on - strand at 513.518 kb on - strand at 513.518 kb on - strand at 513.518 kb on - strand at 513.525 kb on + strand, within DZA65_RS02380 at 513.526 kb on - strand, within DZA65_RS02380 at 513.651 kb on + strand, within DZA65_RS02380 at 513.651 kb on + strand, within DZA65_RS02380 at 513.651 kb on + strand, within DZA65_RS02380 at 513.792 kb on + strand, within DZA65_RS02380 at 513.793 kb on - strand, within DZA65_RS02380 at 513.830 kb on + strand, within DZA65_RS02380 at 513.830 kb on + strand, within DZA65_RS02380 at 513.830 kb on + strand, within DZA65_RS02380 at 513.831 kb on - strand, within DZA65_RS02380 at 513.831 kb on - strand, within DZA65_RS02380 at 513.831 kb on - strand, within DZA65_RS02380 at 513.849 kb on + strand at 513.849 kb on + strand, within DZA65_RS02380 at 513.850 kb on - strand, within DZA65_RS02380 at 513.850 kb on - strand, within DZA65_RS02380 at 513.975 kb on + strand, within DZA65_RS02380 at 513.976 kb on - strand, within DZA65_RS02380 at 513.976 kb on - strand, within DZA65_RS02380 at 513.977 kb on + strand, within DZA65_RS02380 at 513.977 kb on + strand, within DZA65_RS02380 at 513.978 kb on - strand, within DZA65_RS02380 at 513.978 kb on - strand, within DZA65_RS02380 at 513.978 kb on - strand, within DZA65_RS02380 at 513.983 kb on + strand, within DZA65_RS02380 at 514.090 kb on + strand, within DZA65_RS02380 at 514.090 kb on + strand, within DZA65_RS02380 at 514.116 kb on + strand, within DZA65_RS02380 at 514.116 kb on + strand, within DZA65_RS02380 at 514.116 kb on + strand, within DZA65_RS02380 at 514.117 kb on - strand, within DZA65_RS02380 at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.243 kb on - strand at 514.243 kb on - strand at 514.243 kb on - strand at 514.243 kb on - strand at 514.243 kb on - strand at 514.243 kb on - strand at 514.243 kb on - strand at 514.246 kb on + strand at 514.247 kb on - strand at 514.247 kb on - strand at 514.247 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 511,663 + DZA65_RS02370 0.58 -0.2 511,678 - DZA65_RS02370 0.59 +0.5 511,678 - DZA65_RS02370 0.59 -1.1 511,681 + DZA65_RS02370 0.59 -2.4 511,681 + DZA65_RS02370 0.59 +0.9 511,682 - DZA65_RS02370 0.59 -1.6 511,682 - DZA65_RS02370 0.59 -0.4 511,682 - DZA65_RS02370 0.59 -0.6 511,682 - DZA65_RS02370 0.59 +0.1 511,682 - DZA65_RS02370 0.59 -0.2 511,699 + DZA65_RS02370 0.60 +0.7 511,699 + DZA65_RS02370 0.60 +0.1 511,699 + DZA65_RS02370 0.60 -1.4 511,699 + DZA65_RS02370 0.60 -0.4 511,699 + DZA65_RS02370 0.60 +1.2 511,699 + DZA65_RS02370 0.60 +0.1 511,700 - DZA65_RS02370 0.61 +0.1 511,700 - DZA65_RS02370 0.61 -0.6 511,700 - DZA65_RS02370 0.61 +1.6 511,700 - DZA65_RS02370 0.61 +0.9 511,700 - DZA65_RS02370 0.61 +0.1 511,700 - DZA65_RS02370 0.61 -0.8 511,726 + DZA65_RS02370 0.63 -1.4 511,726 + DZA65_RS02370 0.63 -0.8 511,726 + DZA65_RS02370 0.63 -0.1 511,726 + DZA65_RS02370 0.63 +0.2 511,727 - DZA65_RS02370 0.63 +0.4 511,727 - DZA65_RS02370 0.63 +0.1 511,727 - DZA65_RS02370 0.63 +0.4 511,727 - DZA65_RS02370 0.63 +0.8 511,727 - DZA65_RS02370 0.63 +0.6 511,905 + DZA65_RS02370 0.77 +0.2 511,906 - DZA65_RS02370 0.77 +0.9 511,906 - DZA65_RS02370 0.77 -0.2 511,982 + DZA65_RS02370 0.83 -0.9 512,042 + DZA65_RS02370 0.88 -0.6 512,042 + DZA65_RS02370 0.88 -0.1 512,058 + DZA65_RS02370 0.90 +0.7 512,059 - DZA65_RS02370 0.90 -0.2 512,065 + -1.5 512,065 + -0.3 512,066 - -0.6 512,066 - -0.8 512,066 - +0.2 512,066 - +1.6 512,080 + +0.5 512,080 + +2.2 512,081 - -0.1 512,081 - +0.1 512,081 - -0.4 512,104 + -0.0 512,104 + -1.1 512,105 - +0.1 512,191 + +1.0 512,191 + +0.3 512,192 - +0.8 512,192 - -0.6 512,195 + -2.1 512,195 + -0.2 512,195 + +0.0 512,195 + +0.0 512,196 - +1.5 512,222 + +0.3 512,228 + -0.4 512,229 - +0.2 512,303 + +0.1 512,304 - -0.4 512,304 - +0.3 512,304 - +0.7 512,317 - +0.6 512,320 + -1.4 512,321 + +0.1 512,322 - +0.6 512,394 + +0.3 512,395 - -0.1 512,395 - -0.6 512,395 - +0.4 512,406 + -1.0 512,407 - -0.3 512,408 + -0.1 512,408 + +0.9 512,408 + -0.3 512,412 - +0.9 512,412 - +0.0 512,492 + -0.4 512,493 - +0.4 512,507 + -1.9 512,551 - +0.5 512,551 - -0.1 512,554 + -0.8 512,554 + +0.9 512,555 - +0.2 512,555 - -0.2 512,555 - +0.6 512,569 + -0.6 512,569 + -0.5 512,569 + -0.1 512,569 + +0.3 512,569 + +0.9 512,569 + -0.2 512,569 + -0.1 512,569 + +0.6 512,570 - +0.4 512,570 - -0.5 512,570 - +1.2 512,570 - -1.4 512,570 - -0.1 512,570 - -0.6 512,570 - -0.2 512,570 - -0.8 512,570 - -0.8 512,570 - -0.3 512,602 + +0.0 512,602 + -0.4 512,624 + +0.6 512,625 - -0.4 512,625 - -0.9 512,631 + +1.2 512,631 + -0.0 512,631 + +0.3 512,631 + -2.5 512,632 - +0.0 512,632 - -1.3 512,632 - -0.2 512,632 - +2.6 512,632 - -0.4 512,636 - -0.9 512,636 - +0.2 512,636 - -0.1 512,884 + DZA65_RS02375 0.41 -1.0 512,884 + DZA65_RS02375 0.41 -0.9 512,884 + +1.6 512,884 + DZA65_RS02375 0.41 +0.2 512,884 + DZA65_RS02375 0.41 -1.7 512,884 + DZA65_RS02375 0.41 -0.7 512,884 + DZA65_RS02375 0.41 -0.2 512,885 - DZA65_RS02375 0.41 -0.3 512,885 - DZA65_RS02375 0.41 -1.8 512,933 + DZA65_RS02375 0.48 -1.9 512,936 + DZA65_RS02375 0.48 +0.2 513,021 + DZA65_RS02375 0.60 -0.8 513,021 + DZA65_RS02375 0.60 -0.4 513,021 + DZA65_RS02375 0.60 -0.1 513,022 - DZA65_RS02375 0.60 -2.1 513,022 - -0.4 513,022 - DZA65_RS02375 0.60 -2.1 513,022 - DZA65_RS02375 0.60 -0.6 513,022 - DZA65_RS02375 0.60 +0.2 513,102 + DZA65_RS02375 0.71 +0.7 513,102 + DZA65_RS02375 0.71 -0.0 513,103 - DZA65_RS02375 0.71 -1.4 513,167 + DZA65_RS02375 0.80 +0.6 513,350 + +1.8 513,350 + +0.1 513,350 + -0.7 513,350 + -0.5 513,350 + -0.1 513,350 + +0.4 513,351 - -0.1 513,351 - -0.2 513,351 - +1.2 513,351 - -0.5 513,359 + -0.1 513,360 - -1.1 513,360 - +1.6 513,360 - -0.3 513,360 - -2.5 513,360 - -0.4 513,360 - -0.1 513,383 + -1.1 513,383 + -0.1 513,383 + +0.1 513,384 - -0.2 513,384 - +0.7 513,384 - -0.8 513,384 - +0.0 513,384 - -0.2 513,384 - +0.0 513,384 - -0.4 513,384 - -0.2 513,399 + -0.4 513,464 + -0.1 513,464 + -1.6 513,464 + +1.0 513,464 + -1.6 513,465 - +0.4 513,465 - -0.1 513,465 - +0.2 513,465 - +0.2 513,514 + -0.1 513,515 - +1.2 513,515 - -0.1 513,515 - -0.9 513,517 + -0.4 513,517 + +0.5 513,517 + +1.1 513,517 + +0.1 513,517 + +0.3 513,517 + +0.1 513,517 + +1.4 513,517 + -1.8 513,518 - +0.5 513,518 - +0.2 513,518 - -0.4 513,518 - -0.3 513,518 - +0.6 513,518 - +0.2 513,518 - +1.0 513,518 - +0.3 513,525 + DZA65_RS02380 0.11 -1.4 513,526 - DZA65_RS02380 0.11 -0.1 513,651 + DZA65_RS02380 0.26 +0.4 513,651 + DZA65_RS02380 0.26 -0.7 513,651 + DZA65_RS02380 0.26 -0.6 513,792 + DZA65_RS02380 0.44 -0.9 513,793 - DZA65_RS02380 0.44 +0.4 513,830 + DZA65_RS02380 0.49 -1.1 513,830 + DZA65_RS02380 0.49 -2.1 513,830 + DZA65_RS02380 0.49 -2.1 513,831 - DZA65_RS02380 0.49 +0.0 513,831 - DZA65_RS02380 0.49 +0.2 513,831 - DZA65_RS02380 0.49 +0.8 513,849 + +0.6 513,849 + DZA65_RS02380 0.51 -0.7 513,850 - DZA65_RS02380 0.51 -0.4 513,850 - DZA65_RS02380 0.51 +1.2 513,975 + DZA65_RS02380 0.67 +0.9 513,976 - DZA65_RS02380 0.67 -1.4 513,976 - DZA65_RS02380 0.67 -0.0 513,977 + DZA65_RS02380 0.67 +0.3 513,977 + DZA65_RS02380 0.67 +0.3 513,978 - DZA65_RS02380 0.67 +0.5 513,978 - DZA65_RS02380 0.67 +1.0 513,978 - DZA65_RS02380 0.67 +1.0 513,983 + DZA65_RS02380 0.68 -0.2 514,090 + DZA65_RS02380 0.81 -0.8 514,090 + DZA65_RS02380 0.81 +0.2 514,116 + DZA65_RS02380 0.84 +0.1 514,116 + DZA65_RS02380 0.84 -0.2 514,116 + DZA65_RS02380 0.84 +0.0 514,117 - DZA65_RS02380 0.84 -0.5 514,242 + -0.1 514,242 + -0.4 514,242 + +1.2 514,242 + -0.5 514,242 + -0.1 514,242 + -0.4 514,242 + +0.9 514,242 + -0.6 514,242 + +0.0 514,242 + -1.2 514,242 + +0.5 514,243 - +3.6 514,243 - +0.5 514,243 - -0.8 514,243 - -0.1 514,243 - -0.6 514,243 - -0.2 514,243 - +1.4 514,246 + +0.3 514,247 - -0.4 514,247 - -1.6 514,247 - -0.1
Or see this region's nucleotide sequence