Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01580

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01575 and DZA65_RS01580 are separated by 54 nucleotidesDZA65_RS01580 and DZA65_RS01585 are separated by 87 nucleotides DZA65_RS01575: DZA65_RS01575 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 341,308 to 342,570 _RS01575 DZA65_RS01580: DZA65_RS01580 - outer membrane-stress sensor serine endopeptidase DegS, at 342,625 to 343,686 _RS01580 DZA65_RS01585: DZA65_RS01585 - serine endoprotease DegQ, at 343,774 to 345,144 _RS01585 Position (kb) 342 343 344Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 342.639 kb on - strandat 342.649 kb on - strandat 342.649 kb on - strandat 342.665 kb on - strandat 342.665 kb on - strandat 342.665 kb on - strandat 342.675 kb on + strandat 342.676 kb on - strandat 342.742 kb on + strand, within DZA65_RS01580at 342.742 kb on + strand, within DZA65_RS01580at 342.743 kb on - strand, within DZA65_RS01580at 342.743 kb on - strand, within DZA65_RS01580at 342.853 kb on + strand, within DZA65_RS01580at 342.915 kb on + strand, within DZA65_RS01580at 342.916 kb on - strand, within DZA65_RS01580at 342.916 kb on - strand, within DZA65_RS01580at 342.916 kb on - strand, within DZA65_RS01580at 342.916 kb on - strand, within DZA65_RS01580at 342.917 kb on + strand, within DZA65_RS01580at 342.917 kb on + strandat 342.917 kb on + strand, within DZA65_RS01580at 342.917 kb on + strand, within DZA65_RS01580at 342.917 kb on + strand, within DZA65_RS01580at 342.918 kb on - strand, within DZA65_RS01580at 342.918 kb on - strand, within DZA65_RS01580at 342.918 kb on - strand, within DZA65_RS01580at 342.918 kb on - strand, within DZA65_RS01580at 342.958 kb on + strand, within DZA65_RS01580at 342.958 kb on + strand, within DZA65_RS01580at 342.959 kb on - strand, within DZA65_RS01580at 342.959 kb on - strand, within DZA65_RS01580at 342.959 kb on - strand, within DZA65_RS01580at 342.959 kb on - strand, within DZA65_RS01580at 342.984 kb on + strand, within DZA65_RS01580at 343.026 kb on + strand, within DZA65_RS01580at 343.027 kb on - strand, within DZA65_RS01580at 343.205 kb on + strand, within DZA65_RS01580at 343.205 kb on + strand, within DZA65_RS01580at 343.205 kb on + strand, within DZA65_RS01580at 343.206 kb on - strand, within DZA65_RS01580at 343.206 kb on - strand, within DZA65_RS01580at 343.228 kb on + strand, within DZA65_RS01580at 343.228 kb on + strand, within DZA65_RS01580at 343.228 kb on + strand, within DZA65_RS01580at 343.228 kb on + strand, within DZA65_RS01580at 343.228 kb on + strand, within DZA65_RS01580at 343.228 kb on + strand, within DZA65_RS01580at 343.228 kb on + strand, within DZA65_RS01580at 343.228 kb on + strand, within DZA65_RS01580at 343.228 kb on + strand, within DZA65_RS01580at 343.228 kb on + strand, within DZA65_RS01580at 343.229 kb on - strand, within DZA65_RS01580at 343.229 kb on - strand, within DZA65_RS01580at 343.229 kb on - strand, within DZA65_RS01580at 343.229 kb on - strand, within DZA65_RS01580at 343.229 kb on - strand, within DZA65_RS01580at 343.229 kb on - strand, within DZA65_RS01580at 343.229 kb on - strand, within DZA65_RS01580at 343.229 kb on - strand, within DZA65_RS01580at 343.229 kb on - strand, within DZA65_RS01580at 343.229 kb on - strand, within DZA65_RS01580at 343.229 kb on - strand, within DZA65_RS01580at 343.229 kb on - strand, within DZA65_RS01580at 343.229 kb on - strand, within DZA65_RS01580at 343.229 kb on - strand, within DZA65_RS01580at 343.297 kb on + strand, within DZA65_RS01580at 343.298 kb on - strand, within DZA65_RS01580at 343.301 kb on - strand, within DZA65_RS01580at 343.404 kb on + strand, within DZA65_RS01580at 343.404 kb on + strand, within DZA65_RS01580at 343.404 kb on + strand, within DZA65_RS01580at 343.404 kb on + strand, within DZA65_RS01580at 343.404 kb on + strand, within DZA65_RS01580at 343.404 kb on + strand, within DZA65_RS01580at 343.404 kb on + strand, within DZA65_RS01580at 343.404 kb on + strand, within DZA65_RS01580at 343.404 kb on + strand, within DZA65_RS01580at 343.404 kb on + strand, within DZA65_RS01580at 343.404 kb on + strand, within DZA65_RS01580at 343.404 kb on + strand, within DZA65_RS01580at 343.405 kb on - strand, within DZA65_RS01580at 343.405 kb on - strand, within DZA65_RS01580at 343.405 kb on - strand, within DZA65_RS01580at 343.405 kb on - strand, within DZA65_RS01580at 343.405 kb on - strand, within DZA65_RS01580at 343.405 kb on - strand, within DZA65_RS01580at 343.405 kb on - strand, within DZA65_RS01580at 343.405 kb on - strand, within DZA65_RS01580at 343.405 kb on - strand, within DZA65_RS01580at 343.405 kb on - strand, within DZA65_RS01580at 343.407 kb on + strand, within DZA65_RS01580at 343.407 kb on + strand, within DZA65_RS01580at 343.418 kb on + strand, within DZA65_RS01580at 343.418 kb on + strand, within DZA65_RS01580at 343.418 kb on + strand, within DZA65_RS01580at 343.418 kb on + strand, within DZA65_RS01580at 343.418 kb on + strand, within DZA65_RS01580at 343.418 kb on + strand, within DZA65_RS01580at 343.419 kb on - strand, within DZA65_RS01580at 343.419 kb on - strand, within DZA65_RS01580at 343.419 kb on - strand, within DZA65_RS01580at 343.428 kb on + strand, within DZA65_RS01580at 343.428 kb on + strand, within DZA65_RS01580at 343.429 kb on - strand, within DZA65_RS01580at 343.429 kb on - strand, within DZA65_RS01580at 343.438 kb on - strand, within DZA65_RS01580at 343.502 kb on + strand, within DZA65_RS01580at 343.502 kb on + strand, within DZA65_RS01580at 343.502 kb on + strand, within DZA65_RS01580at 343.502 kb on + strand, within DZA65_RS01580at 343.502 kb on + strand, within DZA65_RS01580at 343.502 kb on + strand, within DZA65_RS01580at 343.503 kb on - strand, within DZA65_RS01580at 343.503 kb on - strand, within DZA65_RS01580at 343.503 kb on - strand, within DZA65_RS01580at 343.503 kb on - strand, within DZA65_RS01580at 343.503 kb on - strand, within DZA65_RS01580at 343.503 kb on - strand, within DZA65_RS01580at 343.503 kb on - strand, within DZA65_RS01580at 343.504 kb on + strand, within DZA65_RS01580at 343.504 kb on + strand, within DZA65_RS01580at 343.504 kb on + strandat 343.504 kb on + strand, within DZA65_RS01580at 343.504 kb on + strand, within DZA65_RS01580at 343.504 kb on + strand, within DZA65_RS01580at 343.504 kb on + strand, within DZA65_RS01580at 343.505 kb on - strand, within DZA65_RS01580at 343.505 kb on - strand, within DZA65_RS01580at 343.505 kb on - strand, within DZA65_RS01580at 343.505 kb on - strand, within DZA65_RS01580at 343.505 kb on - strand, within DZA65_RS01580at 343.505 kb on - strand, within DZA65_RS01580at 343.505 kb on - strand, within DZA65_RS01580at 343.505 kb on - strand, within DZA65_RS01580at 343.505 kb on - strand, within DZA65_RS01580at 343.544 kb on + strand, within DZA65_RS01580at 343.545 kb on - strand, within DZA65_RS01580at 343.547 kb on + strand, within DZA65_RS01580at 343.547 kb on + strand, within DZA65_RS01580at 343.547 kb on + strandat 343.547 kb on + strand, within DZA65_RS01580at 343.548 kb on - strand, within DZA65_RS01580at 343.548 kb on - strand, within DZA65_RS01580at 343.572 kb on + strand, within DZA65_RS01580at 343.572 kb on + strand, within DZA65_RS01580at 343.572 kb on + strand, within DZA65_RS01580at 343.573 kb on - strand, within DZA65_RS01580at 343.573 kb on - strand, within DZA65_RS01580at 343.573 kb on - strand, within DZA65_RS01580at 343.573 kb on - strand, within DZA65_RS01580at 343.591 kb on + strandat 343.592 kb on - strandat 343.602 kb on + strandat 343.609 kb on + strandat 343.610 kb on - strandat 343.610 kb on - strandat 343.610 kb on - strandat 343.610 kb on - strandat 343.669 kb on + strandat 343.669 kb on + strandat 343.669 kb on + strandat 343.670 kb on - strandat 343.703 kb on - strandat 343.724 kb on + strandat 343.724 kb on + strandat 343.790 kb on + strandat 343.790 kb on + strandat 343.790 kb on + strandat 343.790 kb on + strandat 343.791 kb on - strandat 343.791 kb on - strandat 343.791 kb on - strandat 343.791 kb on - strandat 343.794 kb on + strandat 343.794 kb on + strandat 343.794 kb on + strandat 343.794 kb on + strandat 343.794 kb on + strandat 343.794 kb on + strandat 343.794 kb on + strandat 343.794 kb on + strandat 343.795 kb on - strandat 343.795 kb on - strandat 343.795 kb on - strandat 343.795 kb on - strandat 343.795 kb on - strandat 343.795 kb on - strandat 343.795 kb on - strandat 343.795 kb on - strandat 343.795 kb on - strandat 343.795 kb on - strandat 343.795 kb on - strandat 343.795 kb on - strandat 343.795 kb on - strandat 343.795 kb on - strandat 343.902 kb on + strandat 343.902 kb on + strandat 343.902 kb on + strandat 343.902 kb on + strandat 343.903 kb on - strandat 343.903 kb on - strandat 343.903 kb on - strandat 343.903 kb on - strandat 343.903 kb on - strandat 343.903 kb on - strandat 343.903 kb on - strandat 343.903 kb on - strandat 343.974 kb on + strand, within DZA65_RS01585at 343.974 kb on + strand, within DZA65_RS01585at 343.974 kb on + strand, within DZA65_RS01585at 343.975 kb on - strand, within DZA65_RS01585at 343.975 kb on - strand, within DZA65_RS01585at 343.975 kb on - strand, within DZA65_RS01585at 343.975 kb on - strand, within DZA65_RS01585at 343.975 kb on - strand, within DZA65_RS01585at 343.977 kb on + strand, within DZA65_RS01585at 343.977 kb on + strand, within DZA65_RS01585at 343.978 kb on - strand, within DZA65_RS01585at 343.986 kb on + strand, within DZA65_RS01585at 344.064 kb on + strand, within DZA65_RS01585at 344.115 kb on + strand, within DZA65_RS01585at 344.115 kb on + strand, within DZA65_RS01585at 344.115 kb on + strand, within DZA65_RS01585at 344.116 kb on - strand, within DZA65_RS01585at 344.116 kb on - strand, within DZA65_RS01585at 344.119 kb on + strand, within DZA65_RS01585at 344.119 kb on + strand, within DZA65_RS01585at 344.119 kb on + strand, within DZA65_RS01585at 344.120 kb on - strand, within DZA65_RS01585at 344.120 kb on - strand, within DZA65_RS01585at 344.120 kb on - strand, within DZA65_RS01585at 344.120 kb on - strand, within DZA65_RS01585at 344.147 kb on - strand, within DZA65_RS01585at 344.147 kb on - strand, within DZA65_RS01585at 344.147 kb on - strand, within DZA65_RS01585at 344.147 kb on - strand, within DZA65_RS01585at 344.192 kb on - strand, within DZA65_RS01585at 344.284 kb on + strand, within DZA65_RS01585at 344.285 kb on - strand, within DZA65_RS01585at 344.427 kb on + strand, within DZA65_RS01585

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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342,639 - -1.0
342,649 - -1.7
342,649 - -0.7
342,665 - -0.3
342,665 - +0.3
342,665 - -1.0
342,675 + -0.9
342,676 - -1.1
342,742 + DZA65_RS01580 0.11 -1.9
342,742 + DZA65_RS01580 0.11 -1.3
342,743 - DZA65_RS01580 0.11 -1.0
342,743 - DZA65_RS01580 0.11 -1.7
342,853 + DZA65_RS01580 0.21 -0.6
342,915 + DZA65_RS01580 0.27 -1.2
342,916 - DZA65_RS01580 0.27 +0.1
342,916 - DZA65_RS01580 0.27 -1.4
342,916 - DZA65_RS01580 0.27 -1.0
342,916 - DZA65_RS01580 0.27 -1.9
342,917 + DZA65_RS01580 0.27 -1.5
342,917 + -0.3
342,917 + DZA65_RS01580 0.27 -3.8
342,917 + DZA65_RS01580 0.27 -2.5
342,917 + DZA65_RS01580 0.27 -1.3
342,918 - DZA65_RS01580 0.28 -2.0
342,918 - DZA65_RS01580 0.28 -2.2
342,918 - DZA65_RS01580 0.28 +0.3
342,918 - DZA65_RS01580 0.28 -2.1
342,958 + DZA65_RS01580 0.31 -1.5
342,958 + DZA65_RS01580 0.31 -1.9
342,959 - DZA65_RS01580 0.31 -2.2
342,959 - DZA65_RS01580 0.31 -1.7
342,959 - DZA65_RS01580 0.31 -2.2
342,959 - DZA65_RS01580 0.31 -1.2
342,984 + DZA65_RS01580 0.34 -0.3
343,026 + DZA65_RS01580 0.38 -2.0
343,027 - DZA65_RS01580 0.38 -2.6
343,205 + DZA65_RS01580 0.55 -1.5
343,205 + DZA65_RS01580 0.55 -0.0
343,205 + DZA65_RS01580 0.55 -3.0
343,206 - DZA65_RS01580 0.55 -2.5
343,206 - DZA65_RS01580 0.55 -1.6
343,228 + DZA65_RS01580 0.57 -0.7
343,228 + DZA65_RS01580 0.57 -2.3
343,228 + DZA65_RS01580 0.57 -2.3
343,228 + DZA65_RS01580 0.57 -1.9
343,228 + DZA65_RS01580 0.57 -1.0
343,228 + DZA65_RS01580 0.57 -1.8
343,228 + DZA65_RS01580 0.57 -1.8
343,228 + DZA65_RS01580 0.57 -1.8
343,228 + DZA65_RS01580 0.57 -1.7
343,228 + DZA65_RS01580 0.57 -1.8
343,229 - DZA65_RS01580 0.57 -2.9
343,229 - DZA65_RS01580 0.57 -2.0
343,229 - DZA65_RS01580 0.57 -2.2
343,229 - DZA65_RS01580 0.57 -0.3
343,229 - DZA65_RS01580 0.57 -1.4
343,229 - DZA65_RS01580 0.57 -2.5
343,229 - DZA65_RS01580 0.57 -0.0
343,229 - DZA65_RS01580 0.57 -1.4
343,229 - DZA65_RS01580 0.57 -3.6
343,229 - DZA65_RS01580 0.57 -2.4
343,229 - DZA65_RS01580 0.57 -2.0
343,229 - DZA65_RS01580 0.57 -1.9
343,229 - DZA65_RS01580 0.57 -2.6
343,229 - DZA65_RS01580 0.57 -2.2
343,297 + DZA65_RS01580 0.63 -1.3
343,298 - DZA65_RS01580 0.63 -2.6
343,301 - DZA65_RS01580 0.64 -1.7
343,404 + DZA65_RS01580 0.73 -1.2
343,404 + DZA65_RS01580 0.73 -1.7
343,404 + DZA65_RS01580 0.73 -2.5
343,404 + DZA65_RS01580 0.73 -0.6
343,404 + DZA65_RS01580 0.73 -2.1
343,404 + DZA65_RS01580 0.73 -1.0
343,404 + DZA65_RS01580 0.73 -0.9
343,404 + DZA65_RS01580 0.73 -1.0
343,404 + DZA65_RS01580 0.73 -0.7
343,404 + DZA65_RS01580 0.73 -1.9
343,404 + DZA65_RS01580 0.73 -2.2
343,404 + DZA65_RS01580 0.73 -2.0
343,405 - DZA65_RS01580 0.73 -3.8
343,405 - DZA65_RS01580 0.73 -2.3
343,405 - DZA65_RS01580 0.73 -2.8
343,405 - DZA65_RS01580 0.73 -3.4
343,405 - DZA65_RS01580 0.73 -2.8
343,405 - DZA65_RS01580 0.73 -2.5
343,405 - DZA65_RS01580 0.73 -2.7
343,405 - DZA65_RS01580 0.73 -1.3
343,405 - DZA65_RS01580 0.73 -0.9
343,405 - DZA65_RS01580 0.73 -2.8
343,407 + DZA65_RS01580 0.74 -1.3
343,407 + DZA65_RS01580 0.74 -0.7
343,418 + DZA65_RS01580 0.75 -1.5
343,418 + DZA65_RS01580 0.75 -2.1
343,418 + DZA65_RS01580 0.75 -2.9
343,418 + DZA65_RS01580 0.75 -1.2
343,418 + DZA65_RS01580 0.75 -0.0
343,418 + DZA65_RS01580 0.75 -3.7
343,419 - DZA65_RS01580 0.75 -2.8
343,419 - DZA65_RS01580 0.75 -3.0
343,419 - DZA65_RS01580 0.75 -0.9
343,428 + DZA65_RS01580 0.76 -0.3
343,428 + DZA65_RS01580 0.76 -1.2
343,429 - DZA65_RS01580 0.76 +0.1
343,429 - DZA65_RS01580 0.76 -3.7
343,438 - DZA65_RS01580 0.77 -2.3
343,502 + DZA65_RS01580 0.83 -1.5
343,502 + DZA65_RS01580 0.83 -3.2
343,502 + DZA65_RS01580 0.83 -1.8
343,502 + DZA65_RS01580 0.83 -2.0
343,502 + DZA65_RS01580 0.83 +0.1
343,502 + DZA65_RS01580 0.83 -1.5
343,503 - DZA65_RS01580 0.83 -1.0
343,503 - DZA65_RS01580 0.83 -0.7
343,503 - DZA65_RS01580 0.83 -2.8
343,503 - DZA65_RS01580 0.83 -2.0
343,503 - DZA65_RS01580 0.83 -1.0
343,503 - DZA65_RS01580 0.83 -0.6
343,503 - DZA65_RS01580 0.83 -0.9
343,504 + DZA65_RS01580 0.83 -1.3
343,504 + DZA65_RS01580 0.83 -1.9
343,504 + +0.3
343,504 + DZA65_RS01580 0.83 -2.3
343,504 + DZA65_RS01580 0.83 -1.9
343,504 + DZA65_RS01580 0.83 -1.5
343,504 + DZA65_RS01580 0.83 -2.9
343,505 - DZA65_RS01580 0.83 -2.8
343,505 - DZA65_RS01580 0.83 -0.7
343,505 - DZA65_RS01580 0.83 -4.0
343,505 - DZA65_RS01580 0.83 -1.6
343,505 - DZA65_RS01580 0.83 -2.6
343,505 - DZA65_RS01580 0.83 +1.3
343,505 - DZA65_RS01580 0.83 -2.7
343,505 - DZA65_RS01580 0.83 -0.3
343,505 - DZA65_RS01580 0.83 -0.5
343,544 + DZA65_RS01580 0.87 -2.1
343,545 - DZA65_RS01580 0.87 -0.9
343,547 + DZA65_RS01580 0.87 -2.8
343,547 + DZA65_RS01580 0.87 -0.3
343,547 + +0.3
343,547 + DZA65_RS01580 0.87 -1.1
343,548 - DZA65_RS01580 0.87 -2.5
343,548 - DZA65_RS01580 0.87 -2.6
343,572 + DZA65_RS01580 0.89 -1.7
343,572 + DZA65_RS01580 0.89 -2.2
343,572 + DZA65_RS01580 0.89 -1.7
343,573 - DZA65_RS01580 0.89 -1.3
343,573 - DZA65_RS01580 0.89 -1.8
343,573 - DZA65_RS01580 0.89 -0.3
343,573 - DZA65_RS01580 0.89 +1.3
343,591 + -2.3
343,592 - -2.9
343,602 + -1.0
343,609 + -2.0
343,610 - -1.5
343,610 - -1.5
343,610 - -0.7
343,610 - -1.0
343,669 + -1.3
343,669 + -2.2
343,669 + -1.8
343,670 - -0.7
343,703 - -0.5
343,724 + -3.0
343,724 + -1.8
343,790 + +0.9
343,790 + +0.7
343,790 + -0.3
343,790 + -1.0
343,791 - -1.0
343,791 - -0.7
343,791 - -0.4
343,791 - +0.6
343,794 + +0.6
343,794 + +0.9
343,794 + -1.3
343,794 + +0.6
343,794 + -1.0
343,794 + +0.1
343,794 + -1.4
343,794 + +0.6
343,795 - +0.8
343,795 - +0.4
343,795 - +0.1
343,795 - -0.0
343,795 - +0.9
343,795 - +0.8
343,795 - -0.3
343,795 - -1.7
343,795 - -0.2
343,795 - -0.1
343,795 - -3.6
343,795 - +0.0
343,795 - +0.1
343,795 - +0.3
343,902 + +0.9
343,902 + +0.8
343,902 + -0.1
343,902 + +0.8
343,903 - -0.3
343,903 - +1.5
343,903 - -0.9
343,903 - -0.7
343,903 - -1.0
343,903 - -0.2
343,903 - -0.4
343,903 - +0.7
343,974 + DZA65_RS01585 0.15 -1.0
343,974 + DZA65_RS01585 0.15 +0.6
343,974 + DZA65_RS01585 0.15 +0.3
343,975 - DZA65_RS01585 0.15 -0.3
343,975 - DZA65_RS01585 0.15 -0.5
343,975 - DZA65_RS01585 0.15 +0.2
343,975 - DZA65_RS01585 0.15 -0.3
343,975 - DZA65_RS01585 0.15 -0.2
343,977 + DZA65_RS01585 0.15 +0.4
343,977 + DZA65_RS01585 0.15 +0.3
343,978 - DZA65_RS01585 0.15 -1.2
343,986 + DZA65_RS01585 0.15 -0.1
344,064 + DZA65_RS01585 0.21 +0.2
344,115 + DZA65_RS01585 0.25 -0.4
344,115 + DZA65_RS01585 0.25 -1.3
344,115 + DZA65_RS01585 0.25 +0.5
344,116 - DZA65_RS01585 0.25 -0.9
344,116 - DZA65_RS01585 0.25 -1.9
344,119 + DZA65_RS01585 0.25 -0.0
344,119 + DZA65_RS01585 0.25 -1.0
344,119 + DZA65_RS01585 0.25 +0.3
344,120 - DZA65_RS01585 0.25 -1.5
344,120 - DZA65_RS01585 0.25 +1.3
344,120 - DZA65_RS01585 0.25 -0.3
344,120 - DZA65_RS01585 0.25 -0.8
344,147 - DZA65_RS01585 0.27 -0.3
344,147 - DZA65_RS01585 0.27 -1.3
344,147 - DZA65_RS01585 0.27 -1.8
344,147 - DZA65_RS01585 0.27 -0.0
344,192 - DZA65_RS01585 0.30 -0.4
344,284 + DZA65_RS01585 0.37 -0.3
344,285 - DZA65_RS01585 0.37 -1.0
344,427 + DZA65_RS01585 0.48 -1.9

Or see this region's nucleotide sequence