Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01240 and DZA65_RS01245 are separated by 311 nucleotides DZA65_RS01245 and DZA65_RS01250 are separated by 4 nucleotides DZA65_RS01250 and DZA65_RS01255 are separated by 82 nucleotides
DZA65_RS01240: DZA65_RS01240 - YjaG family protein, at 276,593 to 277,183
_RS01240
DZA65_RS01245: DZA65_RS01245 - DNA-binding protein HU-alpha, at 277,495 to 277,767
_RS01245
DZA65_RS01250: DZA65_RS01250 - DUF1481 domain-containing protein, at 277,772 to 278,500
_RS01250
DZA65_RS01255: DZA65_RS01255 - phosphoribosylamine--glycine ligase, at 278,583 to 279,872
_RS01255
Position (kb) 277
278
279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 276.854 kb on + strand, within DZA65_RS01240 at 276.854 kb on + strand, within DZA65_RS01240 at 276.855 kb on - strand, within DZA65_RS01240 at 276.855 kb on - strand, within DZA65_RS01240 at 276.855 kb on - strand, within DZA65_RS01240 at 276.861 kb on + strand, within DZA65_RS01240 at 276.861 kb on + strand, within DZA65_RS01240 at 276.861 kb on + strand, within DZA65_RS01240 at 276.862 kb on - strand, within DZA65_RS01240 at 276.862 kb on - strand, within DZA65_RS01240 at 276.862 kb on - strand, within DZA65_RS01240 at 276.862 kb on - strand, within DZA65_RS01240 at 276.972 kb on + strand, within DZA65_RS01240 at 277.117 kb on - strand, within DZA65_RS01240 at 277.117 kb on - strand, within DZA65_RS01240 at 277.153 kb on + strand at 277.153 kb on + strand at 277.154 kb on - strand at 277.154 kb on - strand at 277.154 kb on - strand at 277.157 kb on - strand at 277.175 kb on + strand at 277.201 kb on + strand at 277.202 kb on - strand at 277.202 kb on - strand at 277.202 kb on - strand at 277.224 kb on + strand at 277.253 kb on + strand at 277.253 kb on + strand at 277.253 kb on + strand at 277.268 kb on + strand at 277.293 kb on + strand at 277.293 kb on + strand at 277.293 kb on + strand at 277.369 kb on + strand at 277.369 kb on + strand at 277.377 kb on + strand at 277.377 kb on + strand at 277.377 kb on + strand at 277.425 kb on + strand at 277.879 kb on + strand, within DZA65_RS01250 at 277.879 kb on + strand, within DZA65_RS01250 at 277.879 kb on + strand, within DZA65_RS01250 at 277.879 kb on + strand, within DZA65_RS01250 at 277.880 kb on - strand, within DZA65_RS01250 at 277.880 kb on - strand, within DZA65_RS01250 at 277.880 kb on - strand, within DZA65_RS01250 at 277.888 kb on + strand, within DZA65_RS01250 at 277.888 kb on + strand, within DZA65_RS01250 at 277.889 kb on - strand, within DZA65_RS01250 at 277.889 kb on - strand at 277.889 kb on - strand, within DZA65_RS01250 at 277.907 kb on + strand, within DZA65_RS01250 at 277.907 kb on + strand, within DZA65_RS01250 at 277.954 kb on + strand, within DZA65_RS01250 at 277.954 kb on + strand at 277.954 kb on + strand, within DZA65_RS01250 at 277.964 kb on - strand, within DZA65_RS01250 at 278.007 kb on + strand, within DZA65_RS01250 at 278.078 kb on + strand, within DZA65_RS01250 at 278.078 kb on + strand, within DZA65_RS01250 at 278.078 kb on + strand, within DZA65_RS01250 at 278.078 kb on + strand, within DZA65_RS01250 at 278.078 kb on + strand at 278.078 kb on + strand, within DZA65_RS01250 at 278.078 kb on + strand at 278.079 kb on - strand, within DZA65_RS01250 at 278.079 kb on - strand, within DZA65_RS01250 at 278.079 kb on - strand, within DZA65_RS01250 at 278.079 kb on - strand, within DZA65_RS01250 at 278.079 kb on - strand, within DZA65_RS01250 at 278.079 kb on - strand, within DZA65_RS01250 at 278.079 kb on - strand, within DZA65_RS01250 at 278.079 kb on - strand, within DZA65_RS01250 at 278.079 kb on - strand, within DZA65_RS01250 at 278.079 kb on - strand, within DZA65_RS01250 at 278.156 kb on + strand, within DZA65_RS01250 at 278.156 kb on + strand, within DZA65_RS01250 at 278.156 kb on + strand, within DZA65_RS01250 at 278.156 kb on + strand, within DZA65_RS01250 at 278.156 kb on + strand, within DZA65_RS01250 at 278.156 kb on + strand, within DZA65_RS01250 at 278.156 kb on + strand, within DZA65_RS01250 at 278.156 kb on + strand, within DZA65_RS01250 at 278.156 kb on + strand, within DZA65_RS01250 at 278.156 kb on + strand, within DZA65_RS01250 at 278.157 kb on - strand, within DZA65_RS01250 at 278.157 kb on - strand, within DZA65_RS01250 at 278.157 kb on - strand, within DZA65_RS01250 at 278.157 kb on - strand, within DZA65_RS01250 at 278.157 kb on - strand, within DZA65_RS01250 at 278.157 kb on - strand, within DZA65_RS01250 at 278.157 kb on - strand, within DZA65_RS01250 at 278.157 kb on - strand, within DZA65_RS01250 at 278.157 kb on - strand, within DZA65_RS01250 at 278.157 kb on - strand, within DZA65_RS01250 at 278.208 kb on + strand, within DZA65_RS01250 at 278.209 kb on - strand, within DZA65_RS01250 at 278.209 kb on - strand, within DZA65_RS01250 at 278.216 kb on + strand, within DZA65_RS01250 at 278.217 kb on - strand, within DZA65_RS01250 at 278.217 kb on - strand, within DZA65_RS01250 at 278.217 kb on - strand, within DZA65_RS01250 at 278.434 kb on + strand at 278.435 kb on - strand at 278.435 kb on - strand at 278.435 kb on - strand at 278.498 kb on + strand at 278.498 kb on + strand at 278.499 kb on - strand at 278.512 kb on + strand at 278.512 kb on + strand at 278.512 kb on + strand at 278.512 kb on + strand at 278.512 kb on + strand at 278.513 kb on - strand at 278.513 kb on - strand at 278.513 kb on - strand at 278.513 kb on - strand at 278.521 kb on + strand at 278.521 kb on + strand at 278.671 kb on + strand at 278.694 kb on + strand at 278.781 kb on + strand, within DZA65_RS01255 at 278.781 kb on + strand, within DZA65_RS01255 at 278.781 kb on + strand, within DZA65_RS01255 at 278.781 kb on + strand, within DZA65_RS01255 at 278.781 kb on + strand, within DZA65_RS01255 at 278.782 kb on - strand, within DZA65_RS01255 at 278.782 kb on - strand, within DZA65_RS01255 at 278.786 kb on + strand, within DZA65_RS01255 at 278.786 kb on + strand, within DZA65_RS01255 at 278.787 kb on - strand, within DZA65_RS01255 at 278.787 kb on - strand, within DZA65_RS01255 at 278.787 kb on - strand, within DZA65_RS01255 at 278.834 kb on + strand, within DZA65_RS01255 at 278.949 kb on + strand, within DZA65_RS01255 at 278.949 kb on + strand, within DZA65_RS01255 at 278.950 kb on - strand at 278.950 kb on - strand, within DZA65_RS01255 at 278.950 kb on - strand, within DZA65_RS01255 at 279.076 kb on + strand, within DZA65_RS01255 at 279.076 kb on + strand, within DZA65_RS01255 at 279.076 kb on + strand, within DZA65_RS01255 at 279.076 kb on + strand, within DZA65_RS01255 at 279.076 kb on + strand, within DZA65_RS01255 at 279.076 kb on + strand, within DZA65_RS01255 at 279.077 kb on - strand, within DZA65_RS01255 at 279.077 kb on - strand, within DZA65_RS01255 at 279.077 kb on - strand, within DZA65_RS01255 at 279.119 kb on + strand, within DZA65_RS01255 at 279.119 kb on + strand, within DZA65_RS01255 at 279.119 kb on + strand, within DZA65_RS01255 at 279.119 kb on + strand, within DZA65_RS01255 at 279.119 kb on + strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.175 kb on + strand, within DZA65_RS01255 at 279.176 kb on - strand, within DZA65_RS01255 at 279.176 kb on - strand, within DZA65_RS01255 at 279.324 kb on - strand, within DZA65_RS01255 at 279.440 kb on + strand, within DZA65_RS01255 at 279.471 kb on - strand, within DZA65_RS01255 at 279.471 kb on - strand, within DZA65_RS01255 at 279.472 kb on + strand, within DZA65_RS01255 at 279.472 kb on + strand, within DZA65_RS01255 at 279.472 kb on + strand, within DZA65_RS01255 at 279.472 kb on + strand, within DZA65_RS01255 at 279.472 kb on + strand at 279.472 kb on + strand, within DZA65_RS01255 at 279.472 kb on + strand, within DZA65_RS01255 at 279.472 kb on + strand, within DZA65_RS01255 at 279.473 kb on - strand, within DZA65_RS01255 at 279.473 kb on - strand, within DZA65_RS01255 at 279.473 kb on - strand, within DZA65_RS01255 at 279.473 kb on - strand, within DZA65_RS01255 at 279.473 kb on - strand, within DZA65_RS01255
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 276,854 + DZA65_RS01240 0.44 -1.3 276,854 + DZA65_RS01240 0.44 -0.7 276,855 - DZA65_RS01240 0.44 -1.5 276,855 - DZA65_RS01240 0.44 -1.5 276,855 - DZA65_RS01240 0.44 +1.3 276,861 + DZA65_RS01240 0.45 +1.2 276,861 + DZA65_RS01240 0.45 +0.6 276,861 + DZA65_RS01240 0.45 -0.8 276,862 - DZA65_RS01240 0.46 +0.0 276,862 - DZA65_RS01240 0.46 -1.1 276,862 - DZA65_RS01240 0.46 -0.6 276,862 - DZA65_RS01240 0.46 -0.4 276,972 + DZA65_RS01240 0.64 -1.0 277,117 - DZA65_RS01240 0.89 -0.2 277,117 - DZA65_RS01240 0.89 +0.1 277,153 + +0.2 277,153 + -2.4 277,154 - -0.8 277,154 - +0.7 277,154 - +0.3 277,157 - +1.3 277,175 + +0.1 277,201 + -0.4 277,202 - +0.8 277,202 - -0.8 277,202 - -0.7 277,224 + +0.1 277,253 + -1.1 277,253 + +0.0 277,253 + -0.4 277,268 + +0.7 277,293 + +0.7 277,293 + -0.1 277,293 + +0.3 277,369 + +0.1 277,369 + +0.7 277,377 + -0.8 277,377 + -2.3 277,377 + +1.3 277,425 + +1.7 277,879 + DZA65_RS01250 0.15 -0.1 277,879 + DZA65_RS01250 0.15 +0.5 277,879 + DZA65_RS01250 0.15 -0.2 277,879 + DZA65_RS01250 0.15 +0.1 277,880 - DZA65_RS01250 0.15 -0.2 277,880 - DZA65_RS01250 0.15 -2.0 277,880 - DZA65_RS01250 0.15 -1.1 277,888 + DZA65_RS01250 0.16 +0.2 277,888 + DZA65_RS01250 0.16 +0.5 277,889 - DZA65_RS01250 0.16 +0.4 277,889 - +1.3 277,889 - DZA65_RS01250 0.16 +0.2 277,907 + DZA65_RS01250 0.19 +0.2 277,907 + DZA65_RS01250 0.19 -1.0 277,954 + DZA65_RS01250 0.25 +0.2 277,954 + -0.3 277,954 + DZA65_RS01250 0.25 -0.4 277,964 - DZA65_RS01250 0.26 -0.3 278,007 + DZA65_RS01250 0.32 -0.4 278,078 + DZA65_RS01250 0.42 -1.1 278,078 + DZA65_RS01250 0.42 -0.7 278,078 + DZA65_RS01250 0.42 +0.7 278,078 + DZA65_RS01250 0.42 -0.3 278,078 + -0.7 278,078 + DZA65_RS01250 0.42 -0.7 278,078 + +1.9 278,079 - DZA65_RS01250 0.42 +0.0 278,079 - DZA65_RS01250 0.42 +1.1 278,079 - DZA65_RS01250 0.42 -0.3 278,079 - DZA65_RS01250 0.42 +1.3 278,079 - DZA65_RS01250 0.42 +1.6 278,079 - DZA65_RS01250 0.42 +0.4 278,079 - DZA65_RS01250 0.42 -1.4 278,079 - DZA65_RS01250 0.42 +2.9 278,079 - DZA65_RS01250 0.42 -0.1 278,079 - DZA65_RS01250 0.42 +0.1 278,156 + DZA65_RS01250 0.53 +0.1 278,156 + DZA65_RS01250 0.53 +0.0 278,156 + DZA65_RS01250 0.53 +0.7 278,156 + DZA65_RS01250 0.53 -2.4 278,156 + DZA65_RS01250 0.53 +0.7 278,156 + DZA65_RS01250 0.53 -1.5 278,156 + DZA65_RS01250 0.53 +0.2 278,156 + DZA65_RS01250 0.53 +0.4 278,156 + DZA65_RS01250 0.53 -0.8 278,156 + DZA65_RS01250 0.53 -0.4 278,157 - DZA65_RS01250 0.53 +0.4 278,157 - DZA65_RS01250 0.53 +0.2 278,157 - DZA65_RS01250 0.53 +0.6 278,157 - DZA65_RS01250 0.53 +0.6 278,157 - DZA65_RS01250 0.53 +0.3 278,157 - DZA65_RS01250 0.53 +0.8 278,157 - DZA65_RS01250 0.53 -0.7 278,157 - DZA65_RS01250 0.53 +0.9 278,157 - DZA65_RS01250 0.53 +0.2 278,157 - DZA65_RS01250 0.53 +0.8 278,208 + DZA65_RS01250 0.60 -0.1 278,209 - DZA65_RS01250 0.60 -0.3 278,209 - DZA65_RS01250 0.60 +1.1 278,216 + DZA65_RS01250 0.61 -1.0 278,217 - DZA65_RS01250 0.61 +0.6 278,217 - DZA65_RS01250 0.61 +0.1 278,217 - DZA65_RS01250 0.61 +0.7 278,434 + -2.0 278,435 - +0.6 278,435 - -0.6 278,435 - +0.7 278,498 + +0.3 278,498 + +0.4 278,499 - -0.6 278,512 + -0.3 278,512 + +1.6 278,512 + +0.7 278,512 + -2.0 278,512 + +0.5 278,513 - +0.3 278,513 - +0.8 278,513 - -1.1 278,513 - +1.1 278,521 + -0.2 278,521 + +0.5 278,671 + -3.2 278,694 + -1.8 278,781 + DZA65_RS01255 0.15 -2.1 278,781 + DZA65_RS01255 0.15 -1.8 278,781 + DZA65_RS01255 0.15 +0.2 278,781 + DZA65_RS01255 0.15 -2.1 278,781 + DZA65_RS01255 0.15 -2.5 278,782 - DZA65_RS01255 0.15 +1.1 278,782 - DZA65_RS01255 0.15 -2.6 278,786 + DZA65_RS01255 0.16 -1.2 278,786 + DZA65_RS01255 0.16 -2.8 278,787 - DZA65_RS01255 0.16 -2.6 278,787 - DZA65_RS01255 0.16 -2.4 278,787 - DZA65_RS01255 0.16 -1.8 278,834 + DZA65_RS01255 0.19 -1.5 278,949 + DZA65_RS01255 0.28 -1.1 278,949 + DZA65_RS01255 0.28 -0.4 278,950 - +0.7 278,950 - DZA65_RS01255 0.28 -2.5 278,950 - DZA65_RS01255 0.28 -1.0 279,076 + DZA65_RS01255 0.38 -1.2 279,076 + DZA65_RS01255 0.38 -1.9 279,076 + DZA65_RS01255 0.38 -1.2 279,076 + DZA65_RS01255 0.38 -1.4 279,076 + DZA65_RS01255 0.38 -0.3 279,076 + DZA65_RS01255 0.38 -2.3 279,077 - DZA65_RS01255 0.38 -2.0 279,077 - DZA65_RS01255 0.38 -1.4 279,077 - DZA65_RS01255 0.38 -2.7 279,119 + DZA65_RS01255 0.42 -1.3 279,119 + DZA65_RS01255 0.42 -2.0 279,119 + DZA65_RS01255 0.42 +1.7 279,119 + DZA65_RS01255 0.42 -1.8 279,119 + DZA65_RS01255 0.42 -1.8 279,120 - DZA65_RS01255 0.42 -1.4 279,120 - DZA65_RS01255 0.42 -2.7 279,120 - DZA65_RS01255 0.42 -1.2 279,120 - DZA65_RS01255 0.42 -1.5 279,120 - DZA65_RS01255 0.42 -2.1 279,120 - DZA65_RS01255 0.42 -3.5 279,120 - DZA65_RS01255 0.42 -0.4 279,120 - DZA65_RS01255 0.42 -0.9 279,120 - DZA65_RS01255 0.42 -2.7 279,175 + DZA65_RS01255 0.46 -2.3 279,176 - DZA65_RS01255 0.46 -1.8 279,176 - DZA65_RS01255 0.46 -1.0 279,324 - DZA65_RS01255 0.57 -0.1 279,440 + DZA65_RS01255 0.66 -2.7 279,471 - DZA65_RS01255 0.69 -2.1 279,471 - DZA65_RS01255 0.69 -1.8 279,472 + DZA65_RS01255 0.69 -2.6 279,472 + DZA65_RS01255 0.69 -3.0 279,472 + DZA65_RS01255 0.69 -1.4 279,472 + DZA65_RS01255 0.69 -2.8 279,472 + -0.7 279,472 + DZA65_RS01255 0.69 -1.8 279,472 + DZA65_RS01255 0.69 +0.9 279,472 + DZA65_RS01255 0.69 -1.7 279,473 - DZA65_RS01255 0.69 -2.8 279,473 - DZA65_RS01255 0.69 -0.8 279,473 - DZA65_RS01255 0.69 -1.2 279,473 - DZA65_RS01255 0.69 -2.4 279,473 - DZA65_RS01255 0.69 -2.2
Or see this region's nucleotide sequence