Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS21740 and DZA65_RS21745 are separated by 402 nucleotides DZA65_RS21745 and DZA65_RS21750 are separated by 132 nucleotides
DZA65_RS21740: DZA65_RS21740 - branched-chain amino acid ABC transporter substrate-binding protein, at 4,702,638 to 4,703,750
_RS21740
DZA65_RS21745: DZA65_RS21745 - aspartate 1-decarboxylase autocleavage activator PanM, at 4,704,153 to 4,704,572
_RS21745
DZA65_RS21750: DZA65_RS21750 - RNA polymerase sigma factor RpoH, at 4,704,705 to 4,705,562
_RS21750
Position (kb) 4704
4705 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4703.230 kb on + strand, within DZA65_RS21740 at 4703.230 kb on + strand, within DZA65_RS21740 at 4703.230 kb on + strand, within DZA65_RS21740 at 4703.230 kb on + strand, within DZA65_RS21740 at 4703.230 kb on + strand, within DZA65_RS21740 at 4703.231 kb on - strand, within DZA65_RS21740 at 4703.231 kb on - strand, within DZA65_RS21740 at 4703.259 kb on - strand, within DZA65_RS21740 at 4703.287 kb on + strand, within DZA65_RS21740 at 4703.287 kb on + strand, within DZA65_RS21740 at 4703.287 kb on + strand, within DZA65_RS21740 at 4703.287 kb on + strand, within DZA65_RS21740 at 4703.288 kb on - strand, within DZA65_RS21740 at 4703.288 kb on - strand, within DZA65_RS21740 at 4703.347 kb on + strand, within DZA65_RS21740 at 4703.347 kb on + strand, within DZA65_RS21740 at 4703.347 kb on + strand, within DZA65_RS21740 at 4703.348 kb on - strand, within DZA65_RS21740 at 4703.387 kb on + strand, within DZA65_RS21740 at 4703.387 kb on + strand, within DZA65_RS21740 at 4703.388 kb on - strand, within DZA65_RS21740 at 4703.413 kb on + strand, within DZA65_RS21740 at 4703.413 kb on + strand, within DZA65_RS21740 at 4703.413 kb on + strand, within DZA65_RS21740 at 4703.413 kb on + strand, within DZA65_RS21740 at 4703.413 kb on + strand, within DZA65_RS21740 at 4703.413 kb on + strand, within DZA65_RS21740 at 4703.414 kb on - strand, within DZA65_RS21740 at 4703.414 kb on - strand at 4703.414 kb on - strand at 4703.414 kb on - strand, within DZA65_RS21740 at 4703.414 kb on - strand, within DZA65_RS21740 at 4703.457 kb on + strand, within DZA65_RS21740 at 4703.464 kb on + strand, within DZA65_RS21740 at 4703.465 kb on - strand, within DZA65_RS21740 at 4703.465 kb on - strand, within DZA65_RS21740 at 4703.471 kb on + strand, within DZA65_RS21740 at 4703.471 kb on + strand, within DZA65_RS21740 at 4703.471 kb on + strand, within DZA65_RS21740 at 4703.471 kb on + strand, within DZA65_RS21740 at 4703.471 kb on + strand, within DZA65_RS21740 at 4703.472 kb on - strand, within DZA65_RS21740 at 4703.472 kb on - strand, within DZA65_RS21740 at 4703.472 kb on - strand, within DZA65_RS21740 at 4703.472 kb on - strand, within DZA65_RS21740 at 4703.533 kb on + strand, within DZA65_RS21740 at 4703.533 kb on + strand, within DZA65_RS21740 at 4703.534 kb on - strand, within DZA65_RS21740 at 4703.534 kb on - strand, within DZA65_RS21740 at 4703.534 kb on - strand, within DZA65_RS21740 at 4703.627 kb on - strand, within DZA65_RS21740 at 4703.732 kb on + strand at 4703.742 kb on + strand at 4703.742 kb on + strand at 4703.742 kb on + strand at 4703.743 kb on - strand at 4703.743 kb on - strand at 4703.743 kb on - strand at 4703.743 kb on - strand at 4703.785 kb on + strand at 4703.785 kb on + strand at 4703.785 kb on + strand at 4703.785 kb on + strand at 4703.785 kb on + strand at 4703.786 kb on - strand at 4703.787 kb on + strand at 4703.788 kb on - strand at 4703.788 kb on - strand at 4703.788 kb on - strand at 4703.788 kb on - strand at 4703.791 kb on + strand at 4703.791 kb on + strand at 4703.791 kb on + strand at 4703.791 kb on + strand at 4703.791 kb on + strand at 4703.791 kb on + strand at 4703.791 kb on + strand at 4703.792 kb on - strand at 4703.792 kb on - strand at 4703.792 kb on - strand at 4703.792 kb on - strand at 4703.792 kb on - strand at 4703.824 kb on + strand at 4703.851 kb on + strand at 4703.851 kb on + strand at 4703.851 kb on + strand at 4703.851 kb on + strand at 4703.851 kb on + strand at 4703.851 kb on + strand at 4703.851 kb on + strand at 4703.851 kb on + strand at 4703.851 kb on + strand at 4703.851 kb on + strand at 4703.852 kb on - strand at 4703.852 kb on - strand at 4703.852 kb on - strand at 4703.852 kb on - strand at 4703.852 kb on - strand at 4703.852 kb on - strand at 4703.852 kb on - strand at 4703.853 kb on + strand at 4703.860 kb on + strand at 4703.891 kb on - strand at 4703.946 kb on + strand at 4703.947 kb on - strand at 4704.002 kb on + strand at 4704.002 kb on + strand at 4704.002 kb on + strand at 4704.002 kb on + strand at 4704.002 kb on + strand at 4704.026 kb on + strand at 4704.026 kb on + strand at 4704.026 kb on + strand at 4704.027 kb on - strand at 4704.091 kb on + strand at 4704.096 kb on - strand at 4704.096 kb on - strand at 4704.107 kb on + strand at 4704.118 kb on + strand at 4704.118 kb on + strand at 4704.119 kb on - strand at 4704.119 kb on - strand at 4704.119 kb on - strand at 4704.123 kb on + strand at 4704.124 kb on - strand at 4704.124 kb on - strand at 4704.124 kb on - strand at 4704.129 kb on + strand at 4704.129 kb on + strand at 4704.130 kb on - strand at 4704.153 kb on - strand at 4704.215 kb on + strand, within DZA65_RS21745 at 4704.216 kb on - strand, within DZA65_RS21745 at 4704.332 kb on + strand, within DZA65_RS21745 at 4704.332 kb on + strand, within DZA65_RS21745 at 4704.332 kb on + strand, within DZA65_RS21745 at 4704.333 kb on - strand, within DZA65_RS21745 at 4704.333 kb on - strand, within DZA65_RS21745 at 4704.398 kb on + strand, within DZA65_RS21745 at 4704.398 kb on + strand, within DZA65_RS21745 at 4704.398 kb on + strand, within DZA65_RS21745 at 4704.402 kb on + strand, within DZA65_RS21745 at 4704.402 kb on + strand, within DZA65_RS21745 at 4704.402 kb on + strand, within DZA65_RS21745 at 4704.403 kb on - strand, within DZA65_RS21745 at 4704.403 kb on - strand, within DZA65_RS21745 at 4704.497 kb on + strand, within DZA65_RS21745 at 4704.498 kb on - strand, within DZA65_RS21745 at 4704.523 kb on - strand, within DZA65_RS21745 at 4704.546 kb on + strand at 4704.546 kb on + strand at 4704.546 kb on + strand at 4704.546 kb on + strand at 4704.546 kb on + strand at 4704.547 kb on - strand at 4704.547 kb on - strand at 4704.606 kb on + strand at 4704.606 kb on + strand at 4704.631 kb on + strand at 4704.631 kb on + strand at 4704.631 kb on + strand at 4704.632 kb on - strand at 4704.632 kb on - strand at 4704.632 kb on - strand at 4704.691 kb on - strand at 4704.707 kb on - strand at 4704.707 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 4,703,230 + DZA65_RS21740 0.53 -1.0 4,703,230 + DZA65_RS21740 0.53 +0.4 4,703,230 + DZA65_RS21740 0.53 -0.8 4,703,230 + DZA65_RS21740 0.53 -0.1 4,703,230 + DZA65_RS21740 0.53 -1.0 4,703,231 - DZA65_RS21740 0.53 +0.1 4,703,231 - DZA65_RS21740 0.53 +0.1 4,703,259 - DZA65_RS21740 0.56 -0.5 4,703,287 + DZA65_RS21740 0.58 +0.9 4,703,287 + DZA65_RS21740 0.58 -0.4 4,703,287 + DZA65_RS21740 0.58 -0.3 4,703,287 + DZA65_RS21740 0.58 -1.3 4,703,288 - DZA65_RS21740 0.58 -0.3 4,703,288 - DZA65_RS21740 0.58 +0.0 4,703,347 + DZA65_RS21740 0.64 +0.8 4,703,347 + DZA65_RS21740 0.64 -2.0 4,703,347 + DZA65_RS21740 0.64 -1.5 4,703,348 - DZA65_RS21740 0.64 -3.4 4,703,387 + DZA65_RS21740 0.67 -1.5 4,703,387 + DZA65_RS21740 0.67 -0.8 4,703,388 - DZA65_RS21740 0.67 -0.5 4,703,413 + DZA65_RS21740 0.70 -0.1 4,703,413 + DZA65_RS21740 0.70 +0.5 4,703,413 + DZA65_RS21740 0.70 +0.8 4,703,413 + DZA65_RS21740 0.70 -1.2 4,703,413 + DZA65_RS21740 0.70 -0.1 4,703,413 + DZA65_RS21740 0.70 -0.2 4,703,414 - DZA65_RS21740 0.70 -0.3 4,703,414 - +0.3 4,703,414 - +1.7 4,703,414 - DZA65_RS21740 0.70 -0.4 4,703,414 - DZA65_RS21740 0.70 -0.4 4,703,457 + DZA65_RS21740 0.74 -0.2 4,703,464 + DZA65_RS21740 0.74 -1.0 4,703,465 - DZA65_RS21740 0.74 +0.4 4,703,465 - DZA65_RS21740 0.74 -0.6 4,703,471 + DZA65_RS21740 0.75 +0.1 4,703,471 + DZA65_RS21740 0.75 -0.7 4,703,471 + DZA65_RS21740 0.75 +1.3 4,703,471 + DZA65_RS21740 0.75 -0.1 4,703,471 + DZA65_RS21740 0.75 -0.0 4,703,472 - DZA65_RS21740 0.75 -1.0 4,703,472 - DZA65_RS21740 0.75 +0.3 4,703,472 - DZA65_RS21740 0.75 -0.3 4,703,472 - DZA65_RS21740 0.75 +0.3 4,703,533 + DZA65_RS21740 0.80 -1.1 4,703,533 + DZA65_RS21740 0.80 -1.4 4,703,534 - DZA65_RS21740 0.81 +0.5 4,703,534 - DZA65_RS21740 0.81 +0.8 4,703,534 - DZA65_RS21740 0.81 +0.3 4,703,627 - DZA65_RS21740 0.89 -2.2 4,703,732 + -0.3 4,703,742 + +0.5 4,703,742 + -0.8 4,703,742 + +0.5 4,703,743 - -1.5 4,703,743 - +0.1 4,703,743 - -0.5 4,703,743 - -0.6 4,703,785 + +0.3 4,703,785 + +0.5 4,703,785 + +0.8 4,703,785 + +0.2 4,703,785 + -0.0 4,703,786 - -1.7 4,703,787 + -1.9 4,703,788 - +0.1 4,703,788 - +0.1 4,703,788 - -0.5 4,703,788 - -0.7 4,703,791 + +0.2 4,703,791 + -0.8 4,703,791 + -1.0 4,703,791 + +1.8 4,703,791 + +0.2 4,703,791 + +2.0 4,703,791 + +1.5 4,703,792 - +1.4 4,703,792 - -1.2 4,703,792 - -0.0 4,703,792 - -2.3 4,703,792 - +0.5 4,703,824 + +0.4 4,703,851 + -1.0 4,703,851 + -1.6 4,703,851 + -0.0 4,703,851 + +0.5 4,703,851 + -0.7 4,703,851 + -1.0 4,703,851 + +0.0 4,703,851 + -0.0 4,703,851 + -0.6 4,703,851 + -0.8 4,703,852 - -0.9 4,703,852 - +0.2 4,703,852 - +3.1 4,703,852 - +1.0 4,703,852 - -0.0 4,703,852 - +1.1 4,703,852 - +0.5 4,703,853 + +0.6 4,703,860 + -0.6 4,703,891 - +1.3 4,703,946 + -0.2 4,703,947 - +0.2 4,704,002 + -0.3 4,704,002 + +0.4 4,704,002 + -0.6 4,704,002 + +0.3 4,704,002 + -0.8 4,704,026 + -0.0 4,704,026 + -0.3 4,704,026 + -0.3 4,704,027 - -0.5 4,704,091 + -0.1 4,704,096 - -0.2 4,704,096 - -0.1 4,704,107 + +0.6 4,704,118 + -2.2 4,704,118 + +0.1 4,704,119 - -0.8 4,704,119 - +1.9 4,704,119 - -0.0 4,704,123 + -0.5 4,704,124 - -1.3 4,704,124 - -0.1 4,704,124 - +0.7 4,704,129 + -0.4 4,704,129 + +0.5 4,704,130 - +1.3 4,704,153 - -1.2 4,704,215 + DZA65_RS21745 0.15 -2.6 4,704,216 - DZA65_RS21745 0.15 -2.5 4,704,332 + DZA65_RS21745 0.43 -1.8 4,704,332 + DZA65_RS21745 0.43 -0.9 4,704,332 + DZA65_RS21745 0.43 -2.5 4,704,333 - DZA65_RS21745 0.43 -1.2 4,704,333 - DZA65_RS21745 0.43 +1.0 4,704,398 + DZA65_RS21745 0.58 -1.5 4,704,398 + DZA65_RS21745 0.58 -2.0 4,704,398 + DZA65_RS21745 0.58 +0.4 4,704,402 + DZA65_RS21745 0.59 -1.9 4,704,402 + DZA65_RS21745 0.59 -1.3 4,704,402 + DZA65_RS21745 0.59 -2.4 4,704,403 - DZA65_RS21745 0.60 +0.1 4,704,403 - DZA65_RS21745 0.60 -1.7 4,704,497 + DZA65_RS21745 0.82 -1.5 4,704,498 - DZA65_RS21745 0.82 -1.2 4,704,523 - DZA65_RS21745 0.88 -1.2 4,704,546 + +1.0 4,704,546 + -0.1 4,704,546 + +0.3 4,704,546 + -1.3 4,704,546 + +0.4 4,704,547 - +0.3 4,704,547 - -0.7 4,704,606 + -0.2 4,704,606 + -0.0 4,704,631 + -0.5 4,704,631 + +0.9 4,704,631 + -1.2 4,704,632 - +0.7 4,704,632 - -0.2 4,704,632 - -0.5 4,704,691 - +0.7 4,704,707 - -0.9 4,704,707 - +0.3
Or see this region's nucleotide sequence