Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19655

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS19650 and DZA65_RS19655 are separated by 104 nucleotidesDZA65_RS19655 and DZA65_RS19660 are separated by 99 nucleotidesDZA65_RS19660 and DZA65_RS19665 are separated by 60 nucleotides DZA65_RS19650: DZA65_RS19650 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 4,254,368 to 4,255,750 _RS19650 DZA65_RS19655: DZA65_RS19655 - adenylosuccinate synthase, at 4,255,855 to 4,257,153 _RS19655 DZA65_RS19660: DZA65_RS19660 - DUF2065 domain-containing protein, at 4,257,253 to 4,257,453 _RS19660 DZA65_RS19665: DZA65_RS19665 - protease modulator HflC, at 4,257,514 to 4,258,509 _RS19665 Position (kb) 4255 4256 4257 4258Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4254.893 kb on + strand, within DZA65_RS19650at 4254.893 kb on + strand, within DZA65_RS19650at 4254.893 kb on + strand, within DZA65_RS19650at 4254.893 kb on + strand, within DZA65_RS19650at 4254.893 kb on + strand, within DZA65_RS19650at 4254.894 kb on - strand, within DZA65_RS19650at 4254.894 kb on - strand, within DZA65_RS19650at 4254.909 kb on + strand, within DZA65_RS19650at 4254.909 kb on + strand, within DZA65_RS19650at 4254.909 kb on + strand, within DZA65_RS19650at 4255.149 kb on + strand, within DZA65_RS19650at 4255.149 kb on + strand, within DZA65_RS19650at 4255.149 kb on + strand, within DZA65_RS19650at 4255.150 kb on - strand, within DZA65_RS19650at 4255.150 kb on - strand, within DZA65_RS19650at 4255.150 kb on - strand, within DZA65_RS19650at 4255.150 kb on - strand, within DZA65_RS19650at 4255.150 kb on - strand, within DZA65_RS19650at 4255.150 kb on - strand, within DZA65_RS19650at 4255.151 kb on + strand, within DZA65_RS19650at 4255.151 kb on + strand, within DZA65_RS19650at 4255.151 kb on + strand, within DZA65_RS19650at 4255.151 kb on + strand, within DZA65_RS19650at 4255.152 kb on - strand, within DZA65_RS19650at 4255.152 kb on - strand, within DZA65_RS19650at 4255.152 kb on - strand, within DZA65_RS19650at 4255.152 kb on - strand, within DZA65_RS19650at 4255.152 kb on - strand, within DZA65_RS19650at 4255.152 kb on - strand, within DZA65_RS19650at 4255.152 kb on - strand, within DZA65_RS19650at 4255.164 kb on + strand, within DZA65_RS19650at 4255.164 kb on + strand, within DZA65_RS19650at 4255.164 kb on + strand, within DZA65_RS19650at 4255.164 kb on + strand, within DZA65_RS19650at 4255.165 kb on - strand, within DZA65_RS19650at 4255.165 kb on - strand, within DZA65_RS19650at 4255.165 kb on - strand, within DZA65_RS19650at 4255.165 kb on - strand, within DZA65_RS19650at 4255.213 kb on + strand, within DZA65_RS19650at 4255.346 kb on + strand, within DZA65_RS19650at 4255.346 kb on + strand, within DZA65_RS19650at 4255.488 kb on + strand, within DZA65_RS19650at 4255.540 kb on + strand, within DZA65_RS19650at 4255.540 kb on + strand, within DZA65_RS19650at 4255.540 kb on + strand, within DZA65_RS19650at 4255.540 kb on + strand, within DZA65_RS19650at 4255.541 kb on - strand, within DZA65_RS19650at 4255.541 kb on - strand, within DZA65_RS19650at 4255.541 kb on - strand, within DZA65_RS19650at 4255.541 kb on - strand, within DZA65_RS19650at 4255.541 kb on - strand, within DZA65_RS19650at 4255.618 kb on - strandat 4255.654 kb on + strandat 4255.655 kb on - strandat 4255.655 kb on - strandat 4255.655 kb on - strandat 4255.655 kb on - strandat 4255.655 kb on - strandat 4255.655 kb on - strandat 4255.655 kb on - strandat 4255.663 kb on - strandat 4255.687 kb on + strandat 4255.688 kb on - strandat 4255.688 kb on - strandat 4255.688 kb on - strandat 4255.702 kb on - strandat 4255.702 kb on - strandat 4255.770 kb on + strandat 4255.770 kb on + strandat 4255.770 kb on + strandat 4255.770 kb on + strandat 4255.770 kb on + strandat 4255.770 kb on + strandat 4255.770 kb on + strandat 4255.771 kb on - strandat 4255.771 kb on - strandat 4255.771 kb on - strandat 4255.771 kb on - strandat 4255.771 kb on - strandat 4255.771 kb on - strandat 4255.804 kb on + strandat 4255.856 kb on + strandat 4255.856 kb on + strandat 4255.856 kb on + strandat 4255.856 kb on + strandat 4255.857 kb on - strandat 4255.958 kb on + strandat 4255.989 kb on - strand, within DZA65_RS19655at 4256.451 kb on + strand, within DZA65_RS19655at 4256.651 kb on + strand, within DZA65_RS19655at 4256.741 kb on + strand, within DZA65_RS19655at 4256.990 kb on - strand, within DZA65_RS19655at 4257.066 kb on - strandat 4257.091 kb on + strandat 4257.189 kb on - strandat 4257.189 kb on - strandat 4257.189 kb on - strandat 4257.213 kb on + strandat 4257.214 kb on - strandat 4257.220 kb on - strandat 4257.281 kb on + strandat 4257.281 kb on + strand, within DZA65_RS19660at 4257.281 kb on + strand, within DZA65_RS19660at 4257.281 kb on + strand, within DZA65_RS19660at 4257.281 kb on + strand, within DZA65_RS19660at 4257.281 kb on + strand, within DZA65_RS19660at 4257.281 kb on + strand, within DZA65_RS19660at 4257.281 kb on + strand, within DZA65_RS19660at 4257.282 kb on - strand, within DZA65_RS19660at 4257.282 kb on - strand, within DZA65_RS19660at 4257.282 kb on - strand, within DZA65_RS19660at 4257.282 kb on - strand, within DZA65_RS19660at 4257.282 kb on - strand, within DZA65_RS19660at 4257.282 kb on - strand, within DZA65_RS19660at 4257.282 kb on - strand, within DZA65_RS19660at 4257.282 kb on - strand, within DZA65_RS19660at 4257.284 kb on + strand, within DZA65_RS19660at 4257.284 kb on + strand, within DZA65_RS19660at 4257.284 kb on + strand, within DZA65_RS19660at 4257.284 kb on + strand, within DZA65_RS19660at 4257.284 kb on + strand, within DZA65_RS19660at 4257.284 kb on + strand, within DZA65_RS19660at 4257.284 kb on + strand, within DZA65_RS19660at 4257.284 kb on + strand, within DZA65_RS19660at 4257.284 kb on + strand, within DZA65_RS19660at 4257.284 kb on + strand, within DZA65_RS19660at 4257.284 kb on + strand, within DZA65_RS19660at 4257.285 kb on - strand, within DZA65_RS19660at 4257.285 kb on - strand, within DZA65_RS19660at 4257.285 kb on - strand, within DZA65_RS19660at 4257.285 kb on - strand, within DZA65_RS19660at 4257.310 kb on - strand, within DZA65_RS19660at 4257.334 kb on - strand, within DZA65_RS19660at 4257.354 kb on + strand, within DZA65_RS19660at 4257.355 kb on - strand, within DZA65_RS19660at 4257.378 kb on + strand, within DZA65_RS19660at 4257.379 kb on - strand, within DZA65_RS19660at 4257.379 kb on - strand, within DZA65_RS19660at 4257.381 kb on + strand, within DZA65_RS19660at 4257.392 kb on - strand, within DZA65_RS19660at 4257.411 kb on + strand, within DZA65_RS19660at 4257.412 kb on - strand, within DZA65_RS19660at 4257.412 kb on - strand, within DZA65_RS19660at 4257.412 kb on - strand, within DZA65_RS19660at 4257.412 kb on - strand, within DZA65_RS19660at 4257.412 kb on - strand, within DZA65_RS19660at 4257.412 kb on - strand, within DZA65_RS19660at 4257.415 kb on + strand, within DZA65_RS19660at 4257.453 kb on + strandat 4257.454 kb on - strandat 4257.454 kb on - strandat 4257.505 kb on + strandat 4257.506 kb on - strandat 4257.515 kb on + strandat 4257.522 kb on + strandat 4257.522 kb on + strandat 4257.522 kb on + strandat 4257.552 kb on - strandat 4257.721 kb on - strand, within DZA65_RS19665at 4257.721 kb on - strand, within DZA65_RS19665at 4257.862 kb on - strand, within DZA65_RS19665at 4257.913 kb on - strand, within DZA65_RS19665

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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4,254,893 + DZA65_RS19650 0.38 +1.4
4,254,893 + DZA65_RS19650 0.38 -0.0
4,254,893 + DZA65_RS19650 0.38 -0.3
4,254,893 + DZA65_RS19650 0.38 +1.1
4,254,893 + DZA65_RS19650 0.38 +1.9
4,254,894 - DZA65_RS19650 0.38 +0.1
4,254,894 - DZA65_RS19650 0.38 -2.2
4,254,909 + DZA65_RS19650 0.39 -0.2
4,254,909 + DZA65_RS19650 0.39 -0.8
4,254,909 + DZA65_RS19650 0.39 -0.2
4,255,149 + DZA65_RS19650 0.56 -0.3
4,255,149 + DZA65_RS19650 0.56 -0.6
4,255,149 + DZA65_RS19650 0.56 -1.8
4,255,150 - DZA65_RS19650 0.57 -0.1
4,255,150 - DZA65_RS19650 0.57 -0.7
4,255,150 - DZA65_RS19650 0.57 -0.5
4,255,150 - DZA65_RS19650 0.57 -0.5
4,255,150 - DZA65_RS19650 0.57 +0.3
4,255,150 - DZA65_RS19650 0.57 -1.9
4,255,151 + DZA65_RS19650 0.57 +1.1
4,255,151 + DZA65_RS19650 0.57 -0.0
4,255,151 + DZA65_RS19650 0.57 +0.0
4,255,151 + DZA65_RS19650 0.57 -1.2
4,255,152 - DZA65_RS19650 0.57 +0.8
4,255,152 - DZA65_RS19650 0.57 +0.5
4,255,152 - DZA65_RS19650 0.57 -0.3
4,255,152 - DZA65_RS19650 0.57 -0.2
4,255,152 - DZA65_RS19650 0.57 +0.1
4,255,152 - DZA65_RS19650 0.57 +0.1
4,255,152 - DZA65_RS19650 0.57 +0.7
4,255,164 + DZA65_RS19650 0.58 +0.8
4,255,164 + DZA65_RS19650 0.58 +0.5
4,255,164 + DZA65_RS19650 0.58 +0.1
4,255,164 + DZA65_RS19650 0.58 +0.6
4,255,165 - DZA65_RS19650 0.58 +0.1
4,255,165 - DZA65_RS19650 0.58 -0.5
4,255,165 - DZA65_RS19650 0.58 +0.1
4,255,165 - DZA65_RS19650 0.58 +0.2
4,255,213 + DZA65_RS19650 0.61 +1.0
4,255,346 + DZA65_RS19650 0.71 +0.6
4,255,346 + DZA65_RS19650 0.71 -0.9
4,255,488 + DZA65_RS19650 0.81 -1.0
4,255,540 + DZA65_RS19650 0.85 -0.6
4,255,540 + DZA65_RS19650 0.85 -1.6
4,255,540 + DZA65_RS19650 0.85 +0.7
4,255,540 + DZA65_RS19650 0.85 +0.3
4,255,541 - DZA65_RS19650 0.85 -0.3
4,255,541 - DZA65_RS19650 0.85 +0.6
4,255,541 - DZA65_RS19650 0.85 -0.1
4,255,541 - DZA65_RS19650 0.85 +0.5
4,255,541 - DZA65_RS19650 0.85 +0.3
4,255,618 - +0.3
4,255,654 + +2.4
4,255,655 - +1.4
4,255,655 - -0.5
4,255,655 - -0.1
4,255,655 - +1.9
4,255,655 - -0.3
4,255,655 - -0.5
4,255,655 - +1.1
4,255,663 - +0.1
4,255,687 + +0.3
4,255,688 - +0.2
4,255,688 - +0.2
4,255,688 - -0.1
4,255,702 - +0.5
4,255,702 - -0.6
4,255,770 + -1.5
4,255,770 + +0.1
4,255,770 + -2.0
4,255,770 + +0.6
4,255,770 + -1.1
4,255,770 + +1.8
4,255,770 + +0.1
4,255,771 - +0.2
4,255,771 - -1.7
4,255,771 - -0.5
4,255,771 - +0.9
4,255,771 - -0.5
4,255,771 - +0.8
4,255,804 + -0.5
4,255,856 + +0.5
4,255,856 + +0.1
4,255,856 + -1.4
4,255,856 + +0.3
4,255,857 - +0.1
4,255,958 + -1.2
4,255,989 - DZA65_RS19655 0.10 -4.7
4,256,451 + DZA65_RS19655 0.46 -2.1
4,256,651 + DZA65_RS19655 0.61 -2.5
4,256,741 + DZA65_RS19655 0.68 -1.5
4,256,990 - DZA65_RS19655 0.87 -0.3
4,257,066 - -2.7
4,257,091 + +0.1
4,257,189 - -0.2
4,257,189 - +0.4
4,257,189 - -1.0
4,257,213 + +0.8
4,257,214 - +1.1
4,257,220 - -0.9
4,257,281 + -1.2
4,257,281 + DZA65_RS19660 0.14 -0.5
4,257,281 + DZA65_RS19660 0.14 -0.1
4,257,281 + DZA65_RS19660 0.14 -0.0
4,257,281 + DZA65_RS19660 0.14 +0.2
4,257,281 + DZA65_RS19660 0.14 +0.6
4,257,281 + DZA65_RS19660 0.14 +1.3
4,257,281 + DZA65_RS19660 0.14 -0.5
4,257,282 - DZA65_RS19660 0.14 +2.1
4,257,282 - DZA65_RS19660 0.14 +1.6
4,257,282 - DZA65_RS19660 0.14 -0.0
4,257,282 - DZA65_RS19660 0.14 -0.3
4,257,282 - DZA65_RS19660 0.14 +0.8
4,257,282 - DZA65_RS19660 0.14 -1.2
4,257,282 - DZA65_RS19660 0.14 -0.5
4,257,282 - DZA65_RS19660 0.14 +0.9
4,257,284 + DZA65_RS19660 0.15 -0.8
4,257,284 + DZA65_RS19660 0.15 -0.2
4,257,284 + DZA65_RS19660 0.15 +0.3
4,257,284 + DZA65_RS19660 0.15 +2.9
4,257,284 + DZA65_RS19660 0.15 -0.7
4,257,284 + DZA65_RS19660 0.15 -0.1
4,257,284 + DZA65_RS19660 0.15 -2.0
4,257,284 + DZA65_RS19660 0.15 +0.1
4,257,284 + DZA65_RS19660 0.15 +0.6
4,257,284 + DZA65_RS19660 0.15 +0.5
4,257,284 + DZA65_RS19660 0.15 +1.7
4,257,285 - DZA65_RS19660 0.16 -0.1
4,257,285 - DZA65_RS19660 0.16 +0.7
4,257,285 - DZA65_RS19660 0.16 -0.3
4,257,285 - DZA65_RS19660 0.16 +0.5
4,257,310 - DZA65_RS19660 0.28 -0.7
4,257,334 - DZA65_RS19660 0.40 -0.5
4,257,354 + DZA65_RS19660 0.50 -1.2
4,257,355 - DZA65_RS19660 0.51 -0.3
4,257,378 + DZA65_RS19660 0.62 -0.4
4,257,379 - DZA65_RS19660 0.63 +0.7
4,257,379 - DZA65_RS19660 0.63 -1.9
4,257,381 + DZA65_RS19660 0.64 -0.2
4,257,392 - DZA65_RS19660 0.69 +0.4
4,257,411 + DZA65_RS19660 0.79 -0.3
4,257,412 - DZA65_RS19660 0.79 -1.9
4,257,412 - DZA65_RS19660 0.79 -0.2
4,257,412 - DZA65_RS19660 0.79 -0.9
4,257,412 - DZA65_RS19660 0.79 -1.2
4,257,412 - DZA65_RS19660 0.79 -0.5
4,257,412 - DZA65_RS19660 0.79 +0.3
4,257,415 + DZA65_RS19660 0.81 -1.0
4,257,453 + +0.1
4,257,454 - -0.3
4,257,454 - -0.1
4,257,505 + +0.1
4,257,506 - -0.3
4,257,515 + -0.0
4,257,522 + +0.3
4,257,522 + -1.2
4,257,522 + -0.5
4,257,552 - +0.1
4,257,721 - DZA65_RS19665 0.21 -1.2
4,257,721 - DZA65_RS19665 0.21 +0.6
4,257,862 - DZA65_RS19665 0.35 -1.9
4,257,913 - DZA65_RS19665 0.40 -0.4

Or see this region's nucleotide sequence