Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19345

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS19335 and DZA65_RS19340 overlap by 8 nucleotidesDZA65_RS19340 and DZA65_RS19345 are separated by 15 nucleotidesDZA65_RS19345 and DZA65_RS19350 are separated by 6 nucleotides DZA65_RS19335: DZA65_RS19335 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 4,182,863 to 4,183,864 _RS19335 DZA65_RS19340: DZA65_RS19340 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 4,183,857 to 4,184,675 _RS19340 DZA65_RS19345: DZA65_RS19345 - Co2+/Mg2+ efflux protein ApaG, at 4,184,691 to 4,185,068 _RS19345 DZA65_RS19350: DZA65_RS19350 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical), at 4,185,075 to 4,185,917 _RS19350 Position (kb) 4184 4185 4186Strain fitness (log2 ratio) -3 -2 -1 0 1at 4184.673 kb on + strandat 4184.673 kb on + strandat 4184.674 kb on - strandat 4184.716 kb on + strandat 4184.716 kb on + strandat 4184.717 kb on - strandat 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.737 kb on + strand, within DZA65_RS19345at 4184.737 kb on + strand, within DZA65_RS19345at 4184.737 kb on + strand, within DZA65_RS19345at 4184.737 kb on + strand, within DZA65_RS19345at 4184.737 kb on + strand, within DZA65_RS19345at 4184.737 kb on + strand, within DZA65_RS19345at 4184.737 kb on + strand, within DZA65_RS19345at 4184.737 kb on + strand, within DZA65_RS19345at 4184.737 kb on + strand, within DZA65_RS19345at 4184.738 kb on - strand, within DZA65_RS19345at 4184.738 kb on - strand, within DZA65_RS19345at 4184.738 kb on - strand, within DZA65_RS19345at 4184.738 kb on - strand, within DZA65_RS19345at 4184.738 kb on - strand, within DZA65_RS19345at 4184.738 kb on - strand, within DZA65_RS19345at 4184.781 kb on + strand, within DZA65_RS19345at 4184.781 kb on + strand, within DZA65_RS19345at 4184.781 kb on + strand, within DZA65_RS19345at 4184.781 kb on + strand, within DZA65_RS19345at 4184.781 kb on + strand, within DZA65_RS19345at 4184.781 kb on + strand, within DZA65_RS19345at 4184.781 kb on + strand, within DZA65_RS19345at 4184.781 kb on + strand, within DZA65_RS19345at 4184.782 kb on - strand, within DZA65_RS19345at 4184.782 kb on - strand, within DZA65_RS19345at 4184.782 kb on - strand, within DZA65_RS19345at 4184.782 kb on - strand, within DZA65_RS19345at 4184.782 kb on - strand, within DZA65_RS19345at 4184.783 kb on + strand, within DZA65_RS19345at 4184.784 kb on - strand, within DZA65_RS19345at 4184.784 kb on - strand, within DZA65_RS19345at 4184.784 kb on - strand, within DZA65_RS19345at 4184.784 kb on - strand, within DZA65_RS19345at 4184.784 kb on - strand, within DZA65_RS19345at 4184.842 kb on + strand, within DZA65_RS19345at 4184.843 kb on - strand, within DZA65_RS19345at 4184.843 kb on - strand, within DZA65_RS19345at 4184.843 kb on - strand, within DZA65_RS19345at 4184.846 kb on + strand, within DZA65_RS19345at 4184.846 kb on + strand, within DZA65_RS19345at 4184.846 kb on + strand, within DZA65_RS19345at 4184.846 kb on + strand, within DZA65_RS19345at 4184.846 kb on + strand, within DZA65_RS19345at 4184.846 kb on + strand, within DZA65_RS19345at 4184.847 kb on - strand, within DZA65_RS19345at 4184.847 kb on - strand, within DZA65_RS19345at 4184.847 kb on - strand, within DZA65_RS19345at 4184.934 kb on + strand, within DZA65_RS19345at 4184.935 kb on - strand, within DZA65_RS19345at 4184.935 kb on - strand, within DZA65_RS19345at 4184.935 kb on - strand, within DZA65_RS19345at 4184.935 kb on - strand, within DZA65_RS19345at 4185.061 kb on + strandat 4185.061 kb on + strandat 4185.061 kb on + strandat 4185.061 kb on + strandat 4185.061 kb on + strandat 4185.062 kb on - strandat 4185.062 kb on - strandat 4185.062 kb on - strandat 4185.062 kb on - strandat 4185.075 kb on - strandat 4185.080 kb on + strandat 4185.080 kb on + strandat 4185.080 kb on + strandat 4185.084 kb on + strandat 4185.084 kb on + strandat 4185.084 kb on + strandat 4185.084 kb on + strandat 4185.084 kb on + strandat 4185.084 kb on + strandat 4185.084 kb on + strandat 4185.084 kb on + strandat 4185.085 kb on - strandat 4185.085 kb on - strandat 4185.085 kb on - strandat 4185.225 kb on + strand, within DZA65_RS19350at 4185.225 kb on + strand, within DZA65_RS19350at 4185.226 kb on - strand, within DZA65_RS19350at 4185.226 kb on - strand, within DZA65_RS19350at 4185.226 kb on - strand, within DZA65_RS19350at 4185.226 kb on - strand, within DZA65_RS19350at 4185.295 kb on - strand, within DZA65_RS19350at 4185.513 kb on - strand, within DZA65_RS19350at 4185.540 kb on + strand, within DZA65_RS19350at 4185.540 kb on + strand, within DZA65_RS19350at 4185.611 kb on - strandat 4185.611 kb on - strandat 4185.628 kb on - strand, within DZA65_RS19350at 4185.774 kb on - strand, within DZA65_RS19350at 4185.796 kb on - strand, within DZA65_RS19350at 4185.796 kb on - strand, within DZA65_RS19350at 4185.861 kb on + strandat 4185.861 kb on + strandat 4185.861 kb on + strandat 4185.861 kb on + strandat 4185.862 kb on - strandat 4185.862 kb on - strandat 4185.975 kb on + strandat 4185.976 kb on - strandat 4185.976 kb on - strandat 4185.983 kb on + strandat 4185.983 kb on + strandat 4185.984 kb on - strandat 4186.017 kb on + strandat 4186.017 kb on + strandat 4186.018 kb on - strandat 4186.020 kb on + strandat 4186.021 kb on - strandat 4186.021 kb on - strandat 4186.027 kb on + strandat 4186.028 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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4,184,673 + +0.2
4,184,673 + -0.3
4,184,674 - -1.5
4,184,716 + +0.8
4,184,716 + -0.9
4,184,717 - -0.1
4,184,733 + DZA65_RS19345 0.11 -2.2
4,184,733 + DZA65_RS19345 0.11 -1.5
4,184,733 + DZA65_RS19345 0.11 -0.7
4,184,733 + DZA65_RS19345 0.11 -0.2
4,184,733 + DZA65_RS19345 0.11 -0.7
4,184,733 + DZA65_RS19345 0.11 -0.1
4,184,733 + DZA65_RS19345 0.11 -0.8
4,184,733 + DZA65_RS19345 0.11 -1.0
4,184,733 + DZA65_RS19345 0.11 -1.5
4,184,733 + DZA65_RS19345 0.11 +0.3
4,184,733 + DZA65_RS19345 0.11 +0.1
4,184,733 + DZA65_RS19345 0.11 -0.6
4,184,733 + DZA65_RS19345 0.11 +0.6
4,184,733 + DZA65_RS19345 0.11 -1.6
4,184,733 + DZA65_RS19345 0.11 -1.4
4,184,733 + DZA65_RS19345 0.11 -0.8
4,184,733 + DZA65_RS19345 0.11 -0.7
4,184,733 + DZA65_RS19345 0.11 +0.7
4,184,734 - DZA65_RS19345 0.11 +0.1
4,184,734 - DZA65_RS19345 0.11 -2.1
4,184,734 - DZA65_RS19345 0.11 -2.8
4,184,734 - DZA65_RS19345 0.11 -2.3
4,184,734 - DZA65_RS19345 0.11 -2.1
4,184,734 - DZA65_RS19345 0.11 -1.9
4,184,734 - DZA65_RS19345 0.11 -1.2
4,184,734 - DZA65_RS19345 0.11 -2.8
4,184,734 - DZA65_RS19345 0.11 -2.1
4,184,734 - DZA65_RS19345 0.11 -1.9
4,184,734 - DZA65_RS19345 0.11 -1.5
4,184,734 - DZA65_RS19345 0.11 -2.6
4,184,737 + DZA65_RS19345 0.12 -2.5
4,184,737 + DZA65_RS19345 0.12 -0.0
4,184,737 + DZA65_RS19345 0.12 +0.8
4,184,737 + DZA65_RS19345 0.12 +0.1
4,184,737 + DZA65_RS19345 0.12 -1.4
4,184,737 + DZA65_RS19345 0.12 +1.3
4,184,737 + DZA65_RS19345 0.12 -0.8
4,184,737 + DZA65_RS19345 0.12 -0.7
4,184,737 + DZA65_RS19345 0.12 -0.9
4,184,738 - DZA65_RS19345 0.12 -1.7
4,184,738 - DZA65_RS19345 0.12 -1.5
4,184,738 - DZA65_RS19345 0.12 -1.5
4,184,738 - DZA65_RS19345 0.12 -0.9
4,184,738 - DZA65_RS19345 0.12 -1.8
4,184,738 - DZA65_RS19345 0.12 -2.6
4,184,781 + DZA65_RS19345 0.24 -1.3
4,184,781 + DZA65_RS19345 0.24 -1.7
4,184,781 + DZA65_RS19345 0.24 -0.6
4,184,781 + DZA65_RS19345 0.24 -1.1
4,184,781 + DZA65_RS19345 0.24 -0.1
4,184,781 + DZA65_RS19345 0.24 -2.1
4,184,781 + DZA65_RS19345 0.24 -0.2
4,184,781 + DZA65_RS19345 0.24 -1.9
4,184,782 - DZA65_RS19345 0.24 -2.7
4,184,782 - DZA65_RS19345 0.24 -2.4
4,184,782 - DZA65_RS19345 0.24 -0.6
4,184,782 - DZA65_RS19345 0.24 -1.3
4,184,782 - DZA65_RS19345 0.24 -0.7
4,184,783 + DZA65_RS19345 0.24 +0.1
4,184,784 - DZA65_RS19345 0.25 -1.5
4,184,784 - DZA65_RS19345 0.25 -1.7
4,184,784 - DZA65_RS19345 0.25 -1.2
4,184,784 - DZA65_RS19345 0.25 -0.6
4,184,784 - DZA65_RS19345 0.25 -1.7
4,184,842 + DZA65_RS19345 0.40 -0.1
4,184,843 - DZA65_RS19345 0.40 -1.8
4,184,843 - DZA65_RS19345 0.40 -0.5
4,184,843 - DZA65_RS19345 0.40 -2.9
4,184,846 + DZA65_RS19345 0.41 -0.6
4,184,846 + DZA65_RS19345 0.41 -0.8
4,184,846 + DZA65_RS19345 0.41 +0.2
4,184,846 + DZA65_RS19345 0.41 -1.5
4,184,846 + DZA65_RS19345 0.41 -0.9
4,184,846 + DZA65_RS19345 0.41 -0.7
4,184,847 - DZA65_RS19345 0.41 -2.6
4,184,847 - DZA65_RS19345 0.41 +0.7
4,184,847 - DZA65_RS19345 0.41 -2.7
4,184,934 + DZA65_RS19345 0.64 -0.4
4,184,935 - DZA65_RS19345 0.65 -1.6
4,184,935 - DZA65_RS19345 0.65 -0.8
4,184,935 - DZA65_RS19345 0.65 -3.0
4,184,935 - DZA65_RS19345 0.65 -2.1
4,185,061 + +0.9
4,185,061 + +0.8
4,185,061 + +1.5
4,185,061 + +1.7
4,185,061 + -0.5
4,185,062 - -0.5
4,185,062 - -1.9
4,185,062 - -0.8
4,185,062 - -3.4
4,185,075 - -1.9
4,185,080 + -1.5
4,185,080 + -0.8
4,185,080 + +1.1
4,185,084 + +0.8
4,185,084 + -1.9
4,185,084 + -2.5
4,185,084 + -2.7
4,185,084 + +1.5
4,185,084 + -2.2
4,185,084 + -0.7
4,185,084 + -2.5
4,185,085 - -1.7
4,185,085 - -2.1
4,185,085 - -1.2
4,185,225 + DZA65_RS19350 0.18 -1.5
4,185,225 + DZA65_RS19350 0.18 -1.7
4,185,226 - DZA65_RS19350 0.18 -1.2
4,185,226 - DZA65_RS19350 0.18 -1.6
4,185,226 - DZA65_RS19350 0.18 -1.9
4,185,226 - DZA65_RS19350 0.18 +1.1
4,185,295 - DZA65_RS19350 0.26 -1.2
4,185,513 - DZA65_RS19350 0.52 -2.1
4,185,540 + DZA65_RS19350 0.55 -1.5
4,185,540 + DZA65_RS19350 0.55 -2.9
4,185,611 - -1.5
4,185,611 - -1.2
4,185,628 - DZA65_RS19350 0.66 -2.1
4,185,774 - DZA65_RS19350 0.83 -3.2
4,185,796 - DZA65_RS19350 0.86 -2.3
4,185,796 - DZA65_RS19350 0.86 -2.2
4,185,861 + +0.7
4,185,861 + -2.9
4,185,861 + -1.2
4,185,861 + -2.6
4,185,862 - -2.1
4,185,862 - -2.1
4,185,975 + +1.0
4,185,976 - +0.9
4,185,976 - -0.4
4,185,983 + +1.4
4,185,983 + +0.0
4,185,984 - -2.3
4,186,017 + -1.1
4,186,017 + +0.3
4,186,018 - +0.7
4,186,020 + +0.2
4,186,021 - -0.5
4,186,021 - +0.3
4,186,027 + -0.3
4,186,028 - -1.1

Or see this region's nucleotide sequence