Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19255 and DZA65_RS19260 overlap by 17 nucleotides DZA65_RS19260 and DZA65_RS19265 are separated by 173 nucleotides DZA65_RS19265 and DZA65_RS19270 are separated by 113 nucleotides
DZA65_RS19255: DZA65_RS19255 - thiamine/thiamine pyrophosphate ABC transporter permease ThiP, at 4,162,810 to 4,164,420
_RS19255
DZA65_RS19260: DZA65_RS19260 - thiamine ABC transporter ATP-binding protein ThiQ, at 4,164,404 to 4,165,096
_RS19260
DZA65_RS19265: DZA65_RS19265 - ilvB operon leader peptide IvbL, at 4,165,270 to 4,165,371
_RS19265
DZA65_RS19270: DZA65_RS19270 - acetolactate synthase large subunit, at 4,165,485 to 4,167,149
_RS19270
Position (kb) 4165
4166 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4164.289 kb on + strand at 4164.289 kb on + strand at 4164.289 kb on + strand at 4164.296 kb on - strand at 4164.296 kb on - strand at 4164.313 kb on + strand at 4164.348 kb on - strand at 4164.348 kb on - strand at 4164.348 kb on - strand at 4164.356 kb on + strand at 4164.356 kb on + strand at 4164.357 kb on - strand at 4164.357 kb on - strand at 4164.367 kb on - strand at 4164.401 kb on + strand at 4164.401 kb on + strand at 4164.401 kb on + strand at 4164.401 kb on + strand at 4164.401 kb on + strand at 4164.401 kb on + strand at 4164.401 kb on + strand at 4164.401 kb on + strand at 4164.401 kb on + strand at 4164.401 kb on + strand at 4164.401 kb on + strand at 4164.401 kb on + strand at 4164.401 kb on + strand at 4164.401 kb on + strand at 4164.401 kb on + strand at 4164.401 kb on + strand at 4164.401 kb on + strand at 4164.401 kb on + strand at 4164.401 kb on + strand at 4164.401 kb on + strand at 4164.402 kb on - strand at 4164.402 kb on - strand at 4164.402 kb on - strand at 4164.402 kb on - strand at 4164.402 kb on - strand at 4164.402 kb on - strand at 4164.402 kb on - strand at 4164.402 kb on - strand at 4164.402 kb on - strand at 4164.402 kb on - strand at 4164.402 kb on - strand at 4164.402 kb on - strand at 4164.402 kb on - strand at 4164.402 kb on - strand at 4164.402 kb on - strand at 4164.402 kb on - strand at 4164.402 kb on - strand at 4164.402 kb on - strand at 4164.408 kb on + strand at 4164.408 kb on + strand at 4164.408 kb on + strand at 4164.408 kb on + strand at 4164.409 kb on - strand at 4164.409 kb on - strand at 4164.409 kb on - strand at 4164.409 kb on - strand at 4164.418 kb on + strand at 4164.419 kb on - strand at 4164.428 kb on + strand at 4164.428 kb on + strand at 4164.428 kb on + strand at 4164.428 kb on + strand at 4164.428 kb on + strand at 4164.428 kb on + strand at 4164.428 kb on + strand at 4164.428 kb on + strand at 4164.428 kb on + strand at 4164.429 kb on - strand at 4164.429 kb on - strand at 4164.429 kb on - strand at 4164.429 kb on - strand at 4164.429 kb on - strand at 4164.429 kb on - strand at 4164.429 kb on - strand at 4164.429 kb on - strand at 4164.434 kb on + strand at 4164.435 kb on - strand at 4164.463 kb on - strand at 4164.520 kb on + strand, within DZA65_RS19260 at 4164.520 kb on + strand, within DZA65_RS19260 at 4164.520 kb on + strand, within DZA65_RS19260 at 4164.537 kb on + strand, within DZA65_RS19260 at 4164.537 kb on + strand, within DZA65_RS19260 at 4164.677 kb on - strand, within DZA65_RS19260 at 4164.677 kb on - strand, within DZA65_RS19260 at 4164.952 kb on - strand, within DZA65_RS19260 at 4164.960 kb on + strand at 4164.961 kb on - strand, within DZA65_RS19260 at 4165.028 kb on + strand at 4165.028 kb on + strand at 4165.028 kb on + strand at 4165.028 kb on + strand at 4165.028 kb on + strand at 4165.028 kb on + strand at 4165.028 kb on + strand at 4165.028 kb on + strand at 4165.029 kb on - strand at 4165.029 kb on - strand at 4165.029 kb on - strand at 4165.029 kb on - strand at 4165.029 kb on - strand at 4165.029 kb on - strand at 4165.029 kb on - strand at 4165.029 kb on - strand at 4165.029 kb on - strand at 4165.029 kb on - strand at 4165.226 kb on + strand at 4165.226 kb on + strand at 4165.226 kb on + strand at 4165.226 kb on + strand at 4165.226 kb on + strand at 4165.226 kb on + strand at 4165.227 kb on - strand at 4165.227 kb on - strand at 4165.227 kb on - strand at 4165.227 kb on - strand at 4165.227 kb on - strand at 4165.227 kb on - strand at 4165.228 kb on + strand at 4165.228 kb on + strand at 4165.228 kb on + strand at 4165.228 kb on + strand at 4165.228 kb on + strand at 4165.228 kb on + strand at 4165.228 kb on + strand at 4165.229 kb on - strand at 4165.229 kb on - strand at 4165.229 kb on - strand at 4165.229 kb on - strand at 4165.229 kb on - strand at 4165.243 kb on + strand at 4165.259 kb on + strand at 4165.259 kb on + strand at 4165.259 kb on + strand at 4165.259 kb on + strand at 4165.260 kb on - strand at 4165.260 kb on - strand at 4165.260 kb on - strand at 4165.260 kb on - strand at 4165.260 kb on - strand at 4165.287 kb on + strand, within DZA65_RS19265 at 4165.287 kb on + strand, within DZA65_RS19265 at 4165.287 kb on + strand, within DZA65_RS19265 at 4165.287 kb on + strand, within DZA65_RS19265 at 4165.288 kb on - strand, within DZA65_RS19265 at 4165.299 kb on - strand, within DZA65_RS19265 at 4165.299 kb on - strand, within DZA65_RS19265 at 4165.299 kb on - strand, within DZA65_RS19265 at 4165.301 kb on + strand, within DZA65_RS19265 at 4165.301 kb on + strand, within DZA65_RS19265 at 4165.301 kb on + strand, within DZA65_RS19265 at 4165.301 kb on + strand, within DZA65_RS19265 at 4165.302 kb on - strand, within DZA65_RS19265 at 4165.302 kb on - strand, within DZA65_RS19265 at 4165.302 kb on - strand, within DZA65_RS19265 at 4165.390 kb on + strand at 4165.390 kb on + strand at 4165.390 kb on + strand at 4165.390 kb on + strand at 4165.390 kb on + strand at 4165.390 kb on + strand at 4165.391 kb on - strand at 4165.391 kb on - strand at 4165.391 kb on - strand at 4165.391 kb on - strand at 4165.478 kb on + strand at 4165.478 kb on + strand at 4165.479 kb on - strand at 4165.479 kb on - strand at 4165.479 kb on - strand at 4165.479 kb on - strand at 4165.484 kb on + strand at 4165.484 kb on + strand at 4165.484 kb on + strand at 4165.484 kb on + strand at 4165.484 kb on + strand at 4165.484 kb on + strand at 4165.484 kb on + strand at 4165.484 kb on + strand at 4165.485 kb on - strand at 4165.485 kb on - strand at 4165.491 kb on + strand at 4165.493 kb on + strand at 4165.493 kb on + strand at 4165.493 kb on + strand at 4165.493 kb on + strand at 4165.493 kb on + strand at 4165.494 kb on - strand at 4165.494 kb on - strand at 4165.494 kb on - strand at 4165.494 kb on - strand at 4165.582 kb on - strand at 4165.605 kb on - strand at 4165.618 kb on + strand at 4165.618 kb on + strand at 4165.618 kb on + strand at 4165.618 kb on + strand at 4165.619 kb on - strand at 4165.619 kb on - strand at 4165.619 kb on - strand at 4165.771 kb on + strand, within DZA65_RS19270 at 4165.771 kb on + strand, within DZA65_RS19270 at 4165.772 kb on - strand, within DZA65_RS19270 at 4165.836 kb on + strand, within DZA65_RS19270 at 4165.836 kb on + strand, within DZA65_RS19270 at 4165.836 kb on + strand, within DZA65_RS19270 at 4165.836 kb on + strand, within DZA65_RS19270 at 4165.837 kb on - strand, within DZA65_RS19270 at 4165.837 kb on - strand, within DZA65_RS19270 at 4165.869 kb on + strand, within DZA65_RS19270 at 4165.869 kb on + strand, within DZA65_RS19270 at 4165.869 kb on + strand at 4165.869 kb on + strand, within DZA65_RS19270 at 4165.869 kb on + strand, within DZA65_RS19270 at 4165.869 kb on + strand, within DZA65_RS19270 at 4165.869 kb on + strand, within DZA65_RS19270 at 4165.869 kb on + strand, within DZA65_RS19270 at 4165.869 kb on + strand, within DZA65_RS19270 at 4165.869 kb on + strand, within DZA65_RS19270 at 4165.869 kb on + strand, within DZA65_RS19270 at 4165.870 kb on - strand, within DZA65_RS19270 at 4165.870 kb on - strand, within DZA65_RS19270 at 4165.870 kb on - strand, within DZA65_RS19270 at 4165.870 kb on - strand, within DZA65_RS19270 at 4165.870 kb on - strand, within DZA65_RS19270 at 4165.870 kb on - strand, within DZA65_RS19270 at 4165.870 kb on - strand, within DZA65_RS19270 at 4165.870 kb on - strand, within DZA65_RS19270 at 4166.023 kb on + strand, within DZA65_RS19270 at 4166.023 kb on + strand, within DZA65_RS19270 at 4166.103 kb on + strand, within DZA65_RS19270 at 4166.103 kb on + strand, within DZA65_RS19270 at 4166.103 kb on + strand, within DZA65_RS19270 at 4166.104 kb on - strand, within DZA65_RS19270 at 4166.104 kb on - strand, within DZA65_RS19270 at 4166.104 kb on - strand, within DZA65_RS19270 at 4166.237 kb on + strand, within DZA65_RS19270 at 4166.238 kb on - strand, within DZA65_RS19270 at 4166.238 kb on - strand, within DZA65_RS19270 at 4166.238 kb on - strand, within DZA65_RS19270 at 4166.238 kb on - strand, within DZA65_RS19270 at 4166.263 kb on - strand, within DZA65_RS19270 at 4166.263 kb on - strand, within DZA65_RS19270 at 4166.270 kb on + strand, within DZA65_RS19270 at 4166.270 kb on + strand, within DZA65_RS19270 at 4166.270 kb on + strand, within DZA65_RS19270 at 4166.270 kb on + strand, within DZA65_RS19270 at 4166.271 kb on - strand, within DZA65_RS19270 at 4166.271 kb on - strand, within DZA65_RS19270 at 4166.271 kb on - strand, within DZA65_RS19270 at 4166.271 kb on - strand, within DZA65_RS19270 at 4166.336 kb on + strand, within DZA65_RS19270
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 4,164,289 + -0.6 4,164,289 + -0.1 4,164,289 + +0.7 4,164,296 - +0.5 4,164,296 - +1.5 4,164,313 + +0.6 4,164,348 - +0.6 4,164,348 - +1.1 4,164,348 - -1.5 4,164,356 + -0.3 4,164,356 + -0.5 4,164,357 - +0.8 4,164,357 - +0.1 4,164,367 - +0.8 4,164,401 + +0.8 4,164,401 + +0.5 4,164,401 + +0.1 4,164,401 + -0.5 4,164,401 + +0.0 4,164,401 + +0.0 4,164,401 + +0.3 4,164,401 + -0.6 4,164,401 + -1.0 4,164,401 + +0.9 4,164,401 + -0.2 4,164,401 + +0.3 4,164,401 + +0.2 4,164,401 + +0.9 4,164,401 + +0.7 4,164,401 + -0.8 4,164,401 + -1.5 4,164,401 + -0.1 4,164,401 + -0.5 4,164,401 + -0.4 4,164,402 - +2.1 4,164,402 - -0.9 4,164,402 - -0.2 4,164,402 - -0.1 4,164,402 - -2.2 4,164,402 - +0.7 4,164,402 - +0.6 4,164,402 - -0.5 4,164,402 - +0.4 4,164,402 - +0.1 4,164,402 - -0.7 4,164,402 - +0.1 4,164,402 - -0.1 4,164,402 - +0.0 4,164,402 - +0.6 4,164,402 - +0.6 4,164,402 - +1.2 4,164,402 - -0.3 4,164,408 + +0.3 4,164,408 + -1.2 4,164,408 + +0.1 4,164,408 + -0.4 4,164,409 - +0.4 4,164,409 - -1.7 4,164,409 - +0.4 4,164,409 - -2.0 4,164,418 + +0.1 4,164,419 - +0.6 4,164,428 + +0.8 4,164,428 + +0.5 4,164,428 + +2.4 4,164,428 + -0.3 4,164,428 + +0.7 4,164,428 + -0.6 4,164,428 + -0.3 4,164,428 + -1.4 4,164,428 + -0.4 4,164,429 - +0.8 4,164,429 - -0.1 4,164,429 - -0.4 4,164,429 - -0.3 4,164,429 - -0.1 4,164,429 - +0.2 4,164,429 - -0.1 4,164,429 - -0.1 4,164,434 + -1.8 4,164,435 - +0.5 4,164,463 - -1.9 4,164,520 + DZA65_RS19260 0.17 +0.1 4,164,520 + DZA65_RS19260 0.17 -0.0 4,164,520 + DZA65_RS19260 0.17 +0.7 4,164,537 + DZA65_RS19260 0.19 +0.1 4,164,537 + DZA65_RS19260 0.19 -2.2 4,164,677 - DZA65_RS19260 0.39 +0.1 4,164,677 - DZA65_RS19260 0.39 +0.5 4,164,952 - DZA65_RS19260 0.79 -0.2 4,164,960 + +3.1 4,164,961 - DZA65_RS19260 0.80 -0.9 4,165,028 + -2.1 4,165,028 + -0.0 4,165,028 + +0.4 4,165,028 + +0.6 4,165,028 + -0.3 4,165,028 + -0.8 4,165,028 + -1.7 4,165,028 + -0.1 4,165,029 - -0.7 4,165,029 - -1.5 4,165,029 - +0.1 4,165,029 - +0.3 4,165,029 - -0.0 4,165,029 - -0.8 4,165,029 - -0.5 4,165,029 - -0.5 4,165,029 - -0.6 4,165,029 - -0.5 4,165,226 + -0.2 4,165,226 + -0.1 4,165,226 + -0.1 4,165,226 + -1.2 4,165,226 + -1.6 4,165,226 + -0.3 4,165,227 - -0.8 4,165,227 - -1.7 4,165,227 - -0.4 4,165,227 - -1.0 4,165,227 - -1.8 4,165,227 - -0.0 4,165,228 + +0.1 4,165,228 + -0.5 4,165,228 + -0.9 4,165,228 + -0.3 4,165,228 + -0.1 4,165,228 + +0.9 4,165,228 + -0.2 4,165,229 - +0.3 4,165,229 - -0.2 4,165,229 - +0.5 4,165,229 - +0.1 4,165,229 - -0.4 4,165,243 + -1.1 4,165,259 + -1.7 4,165,259 + +0.9 4,165,259 + -0.0 4,165,259 + -0.2 4,165,260 - -0.3 4,165,260 - -0.7 4,165,260 - -0.9 4,165,260 - -1.4 4,165,260 - +0.1 4,165,287 + DZA65_RS19265 0.17 -0.8 4,165,287 + DZA65_RS19265 0.17 -1.7 4,165,287 + DZA65_RS19265 0.17 -1.1 4,165,287 + DZA65_RS19265 0.17 +0.1 4,165,288 - DZA65_RS19265 0.18 -1.2 4,165,299 - DZA65_RS19265 0.28 -1.7 4,165,299 - DZA65_RS19265 0.28 -1.6 4,165,299 - DZA65_RS19265 0.28 -0.3 4,165,301 + DZA65_RS19265 0.30 +1.8 4,165,301 + DZA65_RS19265 0.30 -1.5 4,165,301 + DZA65_RS19265 0.30 -0.9 4,165,301 + DZA65_RS19265 0.30 +0.5 4,165,302 - DZA65_RS19265 0.31 -1.5 4,165,302 - DZA65_RS19265 0.31 -0.9 4,165,302 - DZA65_RS19265 0.31 +0.3 4,165,390 + -0.8 4,165,390 + -0.5 4,165,390 + -0.9 4,165,390 + -0.3 4,165,390 + -2.4 4,165,390 + +0.2 4,165,391 - -0.7 4,165,391 - -0.3 4,165,391 - -0.5 4,165,391 - -1.9 4,165,478 + -0.1 4,165,478 + -0.9 4,165,479 - -0.1 4,165,479 - -1.4 4,165,479 - -0.2 4,165,479 - -0.5 4,165,484 + -2.0 4,165,484 + -0.7 4,165,484 + -1.2 4,165,484 + -1.7 4,165,484 + -1.2 4,165,484 + -1.2 4,165,484 + -0.7 4,165,484 + +0.2 4,165,485 - +1.1 4,165,485 - -1.7 4,165,491 + -1.2 4,165,493 + +0.2 4,165,493 + -0.2 4,165,493 + +0.1 4,165,493 + -1.5 4,165,493 + +0.2 4,165,494 - +0.1 4,165,494 - +0.6 4,165,494 - +1.3 4,165,494 - -0.6 4,165,582 - +0.3 4,165,605 - -0.0 4,165,618 + +0.5 4,165,618 + -1.2 4,165,618 + -1.2 4,165,618 + -0.4 4,165,619 - -1.5 4,165,619 - -1.6 4,165,619 - -0.9 4,165,771 + DZA65_RS19270 0.17 -2.5 4,165,771 + DZA65_RS19270 0.17 -0.3 4,165,772 - DZA65_RS19270 0.17 -1.1 4,165,836 + DZA65_RS19270 0.21 -2.5 4,165,836 + DZA65_RS19270 0.21 -1.1 4,165,836 + DZA65_RS19270 0.21 -1.9 4,165,836 + DZA65_RS19270 0.21 +1.5 4,165,837 - DZA65_RS19270 0.21 -1.7 4,165,837 - DZA65_RS19270 0.21 -0.6 4,165,869 + DZA65_RS19270 0.23 -0.9 4,165,869 + DZA65_RS19270 0.23 -0.9 4,165,869 + +0.3 4,165,869 + DZA65_RS19270 0.23 -0.3 4,165,869 + DZA65_RS19270 0.23 -1.8 4,165,869 + DZA65_RS19270 0.23 -0.5 4,165,869 + DZA65_RS19270 0.23 -1.2 4,165,869 + DZA65_RS19270 0.23 -1.2 4,165,869 + DZA65_RS19270 0.23 -1.5 4,165,869 + DZA65_RS19270 0.23 -1.4 4,165,869 + DZA65_RS19270 0.23 -0.0 4,165,870 - DZA65_RS19270 0.23 -1.8 4,165,870 - DZA65_RS19270 0.23 +1.1 4,165,870 - DZA65_RS19270 0.23 -0.5 4,165,870 - DZA65_RS19270 0.23 +1.7 4,165,870 - DZA65_RS19270 0.23 -0.7 4,165,870 - DZA65_RS19270 0.23 -0.2 4,165,870 - DZA65_RS19270 0.23 +0.8 4,165,870 - DZA65_RS19270 0.23 -0.8 4,166,023 + DZA65_RS19270 0.32 -0.5 4,166,023 + DZA65_RS19270 0.32 -0.3 4,166,103 + DZA65_RS19270 0.37 -0.7 4,166,103 + DZA65_RS19270 0.37 -0.9 4,166,103 + DZA65_RS19270 0.37 +0.1 4,166,104 - DZA65_RS19270 0.37 -0.7 4,166,104 - DZA65_RS19270 0.37 +1.6 4,166,104 - DZA65_RS19270 0.37 +0.3 4,166,237 + DZA65_RS19270 0.45 +0.3 4,166,238 - DZA65_RS19270 0.45 -0.7 4,166,238 - DZA65_RS19270 0.45 -0.3 4,166,238 - DZA65_RS19270 0.45 -0.8 4,166,238 - DZA65_RS19270 0.45 -1.7 4,166,263 - DZA65_RS19270 0.47 +1.6 4,166,263 - DZA65_RS19270 0.47 +0.6 4,166,270 + DZA65_RS19270 0.47 +0.2 4,166,270 + DZA65_RS19270 0.47 -1.4 4,166,270 + DZA65_RS19270 0.47 -0.4 4,166,270 + DZA65_RS19270 0.47 -2.4 4,166,271 - DZA65_RS19270 0.47 -1.5 4,166,271 - DZA65_RS19270 0.47 -1.1 4,166,271 - DZA65_RS19270 0.47 -0.9 4,166,271 - DZA65_RS19270 0.47 -0.8 4,166,336 + DZA65_RS19270 0.51 -1.2
Or see this region's nucleotide sequence