Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19150

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS19145 and DZA65_RS19150 overlap by 14 nucleotidesDZA65_RS19150 and DZA65_RS19155 are separated by 19 nucleotidesDZA65_RS19155 and DZA65_RS19160 overlap by 4 nucleotides DZA65_RS19145: DZA65_RS19145 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase, at 4,139,190 to 4,140,674 _RS19145 DZA65_RS19150: DZA65_RS19150 - peptidoglycan glycosyltransferase FtsI, at 4,140,661 to 4,142,424 _RS19150 DZA65_RS19155: DZA65_RS19155 - cell division protein FtsL, at 4,142,444 to 4,142,767 _RS19155 DZA65_RS19160: DZA65_RS19160 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 4,142,764 to 4,143,705 _RS19160 Position (kb) 4140 4141 4142 4143Strain fitness (log2 ratio) -1 0 1 2 3at 4140.698 kb on - strandat 4140.742 kb on - strandat 4140.742 kb on - strandat 4140.742 kb on - strandat 4142.441 kb on - strandat 4143.073 kb on - strand, within DZA65_RS19160at 4143.075 kb on - strand, within DZA65_RS19160at 4143.075 kb on - strand, within DZA65_RS19160at 4143.075 kb on - strand, within DZA65_RS19160at 4143.075 kb on - strand, within DZA65_RS19160at 4143.075 kb on - strand, within DZA65_RS19160at 4143.075 kb on - strand, within DZA65_RS19160at 4143.117 kb on - strand, within DZA65_RS19160at 4143.325 kb on - strand, within DZA65_RS19160

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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4,140,698 - -0.2
4,140,742 - +3.3
4,140,742 - +1.2
4,140,742 - +0.1
4,142,441 - +0.3
4,143,073 - DZA65_RS19160 0.33 +0.4
4,143,075 - DZA65_RS19160 0.33 +1.1
4,143,075 - DZA65_RS19160 0.33 -1.1
4,143,075 - DZA65_RS19160 0.33 -0.1
4,143,075 - DZA65_RS19160 0.33 +0.1
4,143,075 - DZA65_RS19160 0.33 +1.1
4,143,075 - DZA65_RS19160 0.33 -0.2
4,143,117 - DZA65_RS19160 0.37 +1.1
4,143,325 - DZA65_RS19160 0.60 -0.1

Or see this region's nucleotide sequence