Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19125

Experiment: M9+glycerol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS19120 and DZA65_RS19125 overlap by 4 nucleotidesDZA65_RS19125 and DZA65_RS19130 overlap by 1 nucleotides DZA65_RS19120: DZA65_RS19120 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase, at 4,133,149 to 4,134,240 _RS19120 DZA65_RS19125: DZA65_RS19125 - cell division protein FtsW, at 4,134,237 to 4,135,439 _RS19125 DZA65_RS19130: DZA65_RS19130 - UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase, at 4,135,439 to 4,136,752 _RS19130 Position (kb) 4134 4135 4136Strain fitness (log2 ratio) -2 -1 0 1at 4134.255 kb on - strandat 4134.255 kb on - strandat 4135.352 kb on - strandat 4135.441 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
remove
4,134,255 - -1.0
4,134,255 - -2.1
4,135,352 - +0.0
4,135,441 - -0.8

Or see this region's nucleotide sequence