Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS18550 and DZA65_RS18555 are separated by 112 nucleotides DZA65_RS18555 and DZA65_RS18560 are separated by 59 nucleotides
DZA65_RS18550: DZA65_RS18550 - diaminopimelate decarboxylase, at 3,997,399 to 3,998,661
_RS18550
DZA65_RS18555: DZA65_RS18555 - LysR family transcriptional regulator, at 3,998,774 to 3,999,721
_RS18555
DZA65_RS18560: DZA65_RS18560 - Fic family protein, at 3,999,781 to 4,001,121
_RS18560
Position (kb) 3998
3999
4000 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 3997.931 kb on + strand, within DZA65_RS18550 at 3997.931 kb on + strand, within DZA65_RS18550 at 3997.932 kb on - strand, within DZA65_RS18550 at 3997.932 kb on - strand, within DZA65_RS18550 at 3997.932 kb on - strand, within DZA65_RS18550 at 3997.932 kb on - strand, within DZA65_RS18550 at 3997.932 kb on - strand, within DZA65_RS18550 at 3997.941 kb on + strand, within DZA65_RS18550 at 3998.159 kb on + strand, within DZA65_RS18550 at 3998.160 kb on - strand, within DZA65_RS18550 at 3998.232 kb on + strand, within DZA65_RS18550 at 3998.233 kb on - strand, within DZA65_RS18550 at 3998.235 kb on + strand, within DZA65_RS18550 at 3998.235 kb on + strand, within DZA65_RS18550 at 3998.236 kb on - strand, within DZA65_RS18550 at 3998.236 kb on - strand, within DZA65_RS18550 at 3998.236 kb on - strand, within DZA65_RS18550 at 3998.236 kb on - strand, within DZA65_RS18550 at 3998.326 kb on + strand, within DZA65_RS18550 at 3998.326 kb on + strand, within DZA65_RS18550 at 3998.327 kb on - strand, within DZA65_RS18550 at 3998.327 kb on - strand, within DZA65_RS18550 at 3998.327 kb on - strand, within DZA65_RS18550 at 3998.371 kb on + strand, within DZA65_RS18550 at 3998.371 kb on + strand, within DZA65_RS18550 at 3998.371 kb on + strand, within DZA65_RS18550 at 3998.371 kb on + strand, within DZA65_RS18550 at 3998.481 kb on + strand, within DZA65_RS18550 at 3998.482 kb on - strand, within DZA65_RS18550 at 3998.482 kb on - strand, within DZA65_RS18550 at 3998.482 kb on - strand, within DZA65_RS18550 at 3998.488 kb on - strand, within DZA65_RS18550 at 3998.556 kb on + strand at 3998.557 kb on - strand at 3998.557 kb on - strand at 3998.557 kb on - strand at 3998.571 kb on - strand at 3998.670 kb on + strand at 3998.675 kb on + strand at 3998.675 kb on + strand at 3998.676 kb on - strand at 3998.676 kb on - strand at 3998.676 kb on - strand at 3998.714 kb on + strand at 3998.714 kb on + strand at 3998.714 kb on + strand at 3998.714 kb on + strand at 3998.714 kb on + strand at 3998.714 kb on + strand at 3998.715 kb on - strand at 3998.715 kb on - strand at 3998.773 kb on + strand at 3998.774 kb on - strand at 3998.774 kb on - strand at 3998.785 kb on - strand at 3998.860 kb on + strand at 3998.948 kb on + strand, within DZA65_RS18555 at 3998.948 kb on + strand, within DZA65_RS18555 at 3998.949 kb on - strand, within DZA65_RS18555 at 3998.949 kb on - strand, within DZA65_RS18555 at 3998.973 kb on + strand, within DZA65_RS18555 at 3998.996 kb on + strand, within DZA65_RS18555 at 3998.996 kb on + strand, within DZA65_RS18555 at 3998.996 kb on + strand, within DZA65_RS18555 at 3998.996 kb on + strand, within DZA65_RS18555 at 3998.997 kb on - strand, within DZA65_RS18555 at 3998.997 kb on - strand, within DZA65_RS18555 at 3998.997 kb on - strand, within DZA65_RS18555 at 3998.997 kb on - strand, within DZA65_RS18555 at 3998.997 kb on - strand, within DZA65_RS18555 at 3998.999 kb on + strand, within DZA65_RS18555 at 3999.233 kb on - strand, within DZA65_RS18555 at 3999.233 kb on - strand, within DZA65_RS18555 at 3999.270 kb on + strand, within DZA65_RS18555 at 3999.270 kb on + strand, within DZA65_RS18555 at 3999.270 kb on + strand, within DZA65_RS18555 at 3999.271 kb on - strand, within DZA65_RS18555 at 3999.524 kb on + strand, within DZA65_RS18555 at 3999.645 kb on + strand at 3999.645 kb on + strand at 3999.645 kb on + strand at 3999.646 kb on - strand at 3999.646 kb on - strand at 3999.646 kb on - strand at 3999.646 kb on - strand at 3999.704 kb on - strand at 3999.842 kb on + strand at 3999.842 kb on + strand at 3999.843 kb on - strand at 3999.843 kb on - strand at 3999.843 kb on - strand at 3999.843 kb on - strand at 3999.843 kb on - strand at 3999.843 kb on - strand at 3999.866 kb on - strand at 3999.866 kb on - strand at 3999.893 kb on - strand at 3999.912 kb on + strand at 3999.912 kb on + strand at 3999.913 kb on - strand at 3999.913 kb on - strand at 3999.913 kb on - strand at 3999.913 kb on - strand at 3999.913 kb on - strand at 3999.913 kb on - strand at 3999.913 kb on - strand at 3999.998 kb on + strand, within DZA65_RS18560 at 3999.999 kb on - strand, within DZA65_RS18560 at 3999.999 kb on - strand, within DZA65_RS18560 at 4000.034 kb on + strand, within DZA65_RS18560 at 4000.034 kb on + strand, within DZA65_RS18560 at 4000.034 kb on + strand at 4000.034 kb on + strand, within DZA65_RS18560 at 4000.034 kb on + strand, within DZA65_RS18560 at 4000.034 kb on + strand, within DZA65_RS18560 at 4000.034 kb on + strand, within DZA65_RS18560 at 4000.035 kb on - strand, within DZA65_RS18560 at 4000.035 kb on - strand, within DZA65_RS18560 at 4000.035 kb on - strand, within DZA65_RS18560 at 4000.035 kb on - strand, within DZA65_RS18560 at 4000.035 kb on - strand, within DZA65_RS18560 at 4000.035 kb on - strand, within DZA65_RS18560 at 4000.035 kb on - strand, within DZA65_RS18560 at 4000.035 kb on - strand, within DZA65_RS18560 at 4000.035 kb on - strand, within DZA65_RS18560 at 4000.035 kb on - strand, within DZA65_RS18560 at 4000.063 kb on - strand, within DZA65_RS18560 at 4000.213 kb on - strand, within DZA65_RS18560 at 4000.271 kb on + strand, within DZA65_RS18560 at 4000.274 kb on + strand, within DZA65_RS18560 at 4000.278 kb on + strand, within DZA65_RS18560 at 4000.282 kb on + strand, within DZA65_RS18560 at 4000.283 kb on - strand, within DZA65_RS18560 at 4000.284 kb on + strand, within DZA65_RS18560 at 4000.284 kb on + strand, within DZA65_RS18560 at 4000.285 kb on - strand, within DZA65_RS18560 at 4000.293 kb on - strand, within DZA65_RS18560 at 4000.323 kb on - strand, within DZA65_RS18560 at 4000.323 kb on - strand, within DZA65_RS18560 at 4000.423 kb on + strand, within DZA65_RS18560 at 4000.426 kb on - strand, within DZA65_RS18560 at 4000.470 kb on - strand, within DZA65_RS18560 at 4000.515 kb on + strand, within DZA65_RS18560 at 4000.591 kb on + strand, within DZA65_RS18560 at 4000.636 kb on - strand, within DZA65_RS18560 at 4000.667 kb on - strand, within DZA65_RS18560 at 4000.682 kb on - strand, within DZA65_RS18560 at 4000.683 kb on + strand, within DZA65_RS18560 at 4000.683 kb on + strand, within DZA65_RS18560 at 4000.684 kb on - strand, within DZA65_RS18560
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 3,997,931 + DZA65_RS18550 0.42 -3.4 3,997,931 + DZA65_RS18550 0.42 -2.8 3,997,932 - DZA65_RS18550 0.42 -1.0 3,997,932 - DZA65_RS18550 0.42 +0.2 3,997,932 - DZA65_RS18550 0.42 +0.4 3,997,932 - DZA65_RS18550 0.42 -1.3 3,997,932 - DZA65_RS18550 0.42 -3.0 3,997,941 + DZA65_RS18550 0.43 -2.1 3,998,159 + DZA65_RS18550 0.60 -2.3 3,998,160 - DZA65_RS18550 0.60 -1.0 3,998,232 + DZA65_RS18550 0.66 -2.3 3,998,233 - DZA65_RS18550 0.66 -2.3 3,998,235 + DZA65_RS18550 0.66 -1.5 3,998,235 + DZA65_RS18550 0.66 -0.5 3,998,236 - DZA65_RS18550 0.66 -2.7 3,998,236 - DZA65_RS18550 0.66 -1.8 3,998,236 - DZA65_RS18550 0.66 -2.3 3,998,236 - DZA65_RS18550 0.66 -2.8 3,998,326 + DZA65_RS18550 0.73 -1.3 3,998,326 + DZA65_RS18550 0.73 -2.4 3,998,327 - DZA65_RS18550 0.73 -2.7 3,998,327 - DZA65_RS18550 0.73 -3.3 3,998,327 - DZA65_RS18550 0.73 -0.5 3,998,371 + DZA65_RS18550 0.77 -3.6 3,998,371 + DZA65_RS18550 0.77 -1.0 3,998,371 + DZA65_RS18550 0.77 -1.8 3,998,371 + DZA65_RS18550 0.77 -3.9 3,998,481 + DZA65_RS18550 0.86 -0.5 3,998,482 - DZA65_RS18550 0.86 -2.1 3,998,482 - DZA65_RS18550 0.86 -2.9 3,998,482 - DZA65_RS18550 0.86 +0.3 3,998,488 - DZA65_RS18550 0.86 -4.0 3,998,556 + -0.5 3,998,557 - -2.4 3,998,557 - -1.5 3,998,557 - -2.3 3,998,571 - -0.5 3,998,670 + -2.0 3,998,675 + -1.0 3,998,675 + -1.2 3,998,676 - +0.6 3,998,676 - +0.3 3,998,676 - -0.1 3,998,714 + -3.4 3,998,714 + -2.8 3,998,714 + -2.3 3,998,714 + +0.0 3,998,714 + -0.5 3,998,714 + -0.8 3,998,715 - +0.9 3,998,715 - -0.0 3,998,773 + -0.5 3,998,774 - -0.6 3,998,774 - +2.6 3,998,785 - -0.1 3,998,860 + -0.4 3,998,948 + DZA65_RS18555 0.18 -1.5 3,998,948 + DZA65_RS18555 0.18 -0.1 3,998,949 - DZA65_RS18555 0.18 -2.8 3,998,949 - DZA65_RS18555 0.18 -0.4 3,998,973 + DZA65_RS18555 0.21 -0.2 3,998,996 + DZA65_RS18555 0.23 -0.2 3,998,996 + DZA65_RS18555 0.23 -2.1 3,998,996 + DZA65_RS18555 0.23 -1.5 3,998,996 + DZA65_RS18555 0.23 -1.2 3,998,997 - DZA65_RS18555 0.24 +0.5 3,998,997 - DZA65_RS18555 0.24 +1.0 3,998,997 - DZA65_RS18555 0.24 -1.2 3,998,997 - DZA65_RS18555 0.24 +0.1 3,998,997 - DZA65_RS18555 0.24 +0.2 3,998,999 + DZA65_RS18555 0.24 -0.5 3,999,233 - DZA65_RS18555 0.48 -0.1 3,999,233 - DZA65_RS18555 0.48 +0.0 3,999,270 + DZA65_RS18555 0.52 -1.3 3,999,270 + DZA65_RS18555 0.52 -1.5 3,999,270 + DZA65_RS18555 0.52 -0.6 3,999,271 - DZA65_RS18555 0.52 -1.0 3,999,524 + DZA65_RS18555 0.79 +2.5 3,999,645 + -1.8 3,999,645 + -0.8 3,999,645 + +1.0 3,999,646 - -0.4 3,999,646 - -0.9 3,999,646 - -0.1 3,999,646 - -0.8 3,999,704 - +0.0 3,999,842 + -1.3 3,999,842 + -0.1 3,999,843 - -0.8 3,999,843 - +1.9 3,999,843 - +0.4 3,999,843 - +0.7 3,999,843 - +0.3 3,999,843 - -1.2 3,999,866 - -1.0 3,999,866 - +1.2 3,999,893 - +0.0 3,999,912 + -0.0 3,999,912 + +1.0 3,999,913 - -0.9 3,999,913 - -0.1 3,999,913 - +0.0 3,999,913 - +0.7 3,999,913 - -0.6 3,999,913 - +0.0 3,999,913 - -0.8 3,999,998 + DZA65_RS18560 0.16 +0.5 3,999,999 - DZA65_RS18560 0.16 +1.0 3,999,999 - DZA65_RS18560 0.16 +1.0 4,000,034 + DZA65_RS18560 0.19 -0.2 4,000,034 + DZA65_RS18560 0.19 -0.1 4,000,034 + -1.0 4,000,034 + DZA65_RS18560 0.19 -0.8 4,000,034 + DZA65_RS18560 0.19 -0.7 4,000,034 + DZA65_RS18560 0.19 -0.4 4,000,034 + DZA65_RS18560 0.19 -0.4 4,000,035 - DZA65_RS18560 0.19 -0.4 4,000,035 - DZA65_RS18560 0.19 -1.4 4,000,035 - DZA65_RS18560 0.19 -2.0 4,000,035 - DZA65_RS18560 0.19 +0.7 4,000,035 - DZA65_RS18560 0.19 -0.4 4,000,035 - DZA65_RS18560 0.19 -0.5 4,000,035 - DZA65_RS18560 0.19 -0.1 4,000,035 - DZA65_RS18560 0.19 +0.3 4,000,035 - DZA65_RS18560 0.19 -0.4 4,000,035 - DZA65_RS18560 0.19 -0.1 4,000,063 - DZA65_RS18560 0.21 +1.0 4,000,213 - DZA65_RS18560 0.32 +0.5 4,000,271 + DZA65_RS18560 0.37 +0.4 4,000,274 + DZA65_RS18560 0.37 -0.2 4,000,278 + DZA65_RS18560 0.37 +0.8 4,000,282 + DZA65_RS18560 0.37 -0.2 4,000,283 - DZA65_RS18560 0.37 -0.3 4,000,284 + DZA65_RS18560 0.38 -0.4 4,000,284 + DZA65_RS18560 0.38 +0.2 4,000,285 - DZA65_RS18560 0.38 +0.3 4,000,293 - DZA65_RS18560 0.38 -0.3 4,000,323 - DZA65_RS18560 0.40 -0.1 4,000,323 - DZA65_RS18560 0.40 -0.4 4,000,423 + DZA65_RS18560 0.48 +0.5 4,000,426 - DZA65_RS18560 0.48 -0.8 4,000,470 - DZA65_RS18560 0.51 +0.2 4,000,515 + DZA65_RS18560 0.55 +0.0 4,000,591 + DZA65_RS18560 0.60 -0.4 4,000,636 - DZA65_RS18560 0.64 -1.3 4,000,667 - DZA65_RS18560 0.66 +0.8 4,000,682 - DZA65_RS18560 0.67 +0.6 4,000,683 + DZA65_RS18560 0.67 -1.2 4,000,683 + DZA65_RS18560 0.67 +0.6 4,000,684 - DZA65_RS18560 0.67 +0.5
Or see this region's nucleotide sequence